TkA07G403060 | RubberDandelionOmics

Gene overview

TkA07G403060

Reference: TK1151 Chr: Chr07 Coordinates: 101290355-101291494 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1095 bp · TkA07G403060|TK1151|cDNA

ATGAGATCTCTGAATTTGATTGATTCTTGGGTTCAAACATGCTCCATATTCAACGGATCTTCCTCCTCCTCATTCGTCGGATTGATCTGCAAAACACCCATGAAATGCACTTCGTCTTCTTCTTCGTCTTCGTGTTTCTCTGTGTCTGCTGTTGTTACGAAGGAGGAGCAGGAAACTCTGGGGGAAATCTCGTCGGGATCGGATTGCTTTAATTTTAAGGCGTATATGGGGGAGAAAGCTGATCGGGTGAACAGAGCATT...

CDS

Download CDS FASTA

1095 bp · TkA07G403060|TK1151|CDS

ATGAGATCTCTGAATTTGATTGATTCTTGGGTTCAAACATGCTCCATATTCAACGGATCTTCCTCCTCCTCATTCGTCGGATTGATCTGCAAAACACCCATGAAATGCACTTCGTCTTCTTCTTCGTCTTCGTGTTTCTCTGTGTCTGCTGTTGTTACGAAGGAGGAGCAGGAAACTCTGGGGGAAATCTCGTCGGGATCGGATTGCTTTAATTTTAAGGCGTATATGGGGGAGAAAGCTGATCGGGTGAACAGAGCATT...

Protein

Download Protein FASTA

364 aa · TkA07G403060|TK1151|PROTEIN

MRSLNLIDSWVQTCSIFNGSSSSSFVGLICKTPMKCTSSSSSSSCFSVSAVVTKEEQETLGEISSGSDCFNFKAYMGEKADRVNRALDESISVKTPPTIHEAMRYSLLAGGKRVRPILCIAACELVGGDESTAMPAACAVEMIHTMSLIHDDLPCMDNDDFRRGKPTNHKVYGEDVAVLAGDSLLAFAFQHIASATVGASPARVLAAVGELAKSIGTEGLVAGQVVDIASTGAKDVGLEQLEFIHIHKTAVLLEAAVVLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G403060`
TK1151 ID	TkA07G403060
OH-1004 ID	LXL04_030439
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 87.912 / OH-1004 92.486 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G403060

Location Chr07:101290355-101291494 (-)

Description Similar to GGPS1: Geranylgeranyl pyrophosphate synthase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36810`	Heterodimeric geranyl(geranyl)-diphosphate (GPP) synthase large subunit.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030439 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006720 isoprenoid metabolic process Biological Process

GO:0008299 isoprenoid biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016117 carotenoid biosynthetic process Biological Process

GO:0033384 geranyl diphosphate biosynthetic process Biological Process

GO:0033386 geranylgeranyl diphosphate biosynthetic process Biological Process

GO:0043693 monoterpene biosynthetic process Biological Process

GO:0045337 farnesyl diphosphate biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009509 chromoplast Cellular Component

GO:0009513 etioplast Cellular Component

KEGG gene cross-reference

ath:AT4G36810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.913

Rank 1 · TkA07G403060 · TK1151

Mitochondrion0.072

Rank 2 · TkA07G403060 · TK1151

Cytoplasm0.049

Rank 3 · TkA07G403060 · TK1151

Peroxisome0.028

Rank 4 · TkA07G403060 · TK1151

Endoplasmic reticulum0.027

Rank 5 · TkA07G403060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16400DUF500838-107 aa

PF00348polyprenyl_synt97-337 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G403060	`PF16400`	DUF5008	38	107	0.061	13.8
TkA07G403060	`PF00348`	polyprenyl_synt	97	337	1.7e-61	208.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P34802`	Arabidopsis thaliana	sp\|P34802\|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic	75.000%	Swiss-Prot	High

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