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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G401780
Reference: TK1151 Chr: Chr07 Coordinates: 100949034-100952680 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3064 bp · TkA07G401780|TK1151|cDNA

GACCATTATGCCCTTACTAACCCTATACCCTTCTTTTCATCGGCCGACACAGAAAAGTGAGAAACACATCGTGCTCGTGAGGTCGTCTTCTTCACGCTGGTTCCACCCTGCTGCTCGCCGCTCGCCGTTCGCAGCTCGTCTTCTCGCCGGTCCGTCTCTCCATCTACCTAACTGACGTTAGGAAACGAAAACCCTAGCTTCATCCTCGATTTATCTCAATTTGGTCCACAGAGCCGGTTTAAATCGGCAATCGGCAATCG...

CDS

Download CDS FASTA

2178 bp · TkA07G401780|TK1151|CDS

ATGGGAAAGAAAAAAACAGATGAGGGCGGAGAGAAGAGCAAGCAAACCAACAAAGAAGGAAAGAAAGAAAAACTATCCGTCTCAGCCATGCTTGCCAACATGGACCAAAAACCCGAAAAACCAAAGAAAGCAACCTCATCAACCTCCACCACCACCACCCGCAACCCCAAATCCAAACCCCCTCAAAAGCTCCAGACATCATACGCAGACATCGACCTCCCTCCATCAGACGACGAAGAAGACGAAGTATCCGAAGACGA...

Protein

Download Protein FASTA

725 aa · TkA07G401780|TK1151|PROTEIN

MGKKKTDEGGEKSKQTNKEGKKEKLSVSAMLANMDQKPEKPKKATSSTSTTTTRNPKSKPPQKLQTSYADIDLPPSDDEEDEVSEDESQLGQPKKLTRKERAHDRTLEISITEKDLKKREKKDMIHAQVIEQAKQEALKDDRDAFTVVIGSRASVLDGENDADANVKDITVDNFSVSARGKELMKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKTALQAVVSANEELVNLRQQVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G401780
TK1151 IDTkA07G401780
OH-1004 IDLXL04_030396
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 97.181
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G401780
LocationChr07:100949034-100952680 (-)
DescriptionSimilar to ABCF4: ABC transporter F family member 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54540 ABC transporter F family member 4. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030396 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006412 translation Biological Process
GO:0006413 translational initiation Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:0005635 nuclear envelope Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005840 ribosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G54540
hsa:23
ptr:462543
rno:85493
ssc:100144452
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580
Rank 1 · TkA07G401780 · TK1151
Cytoplasm0.495
Rank 2 · TkA07G401780 · TK1151
Endoplasmic reticulum0.045
Rank 3 · TkA07G401780 · TK1151
Cell membrane0.042
Rank 4 · TkA07G401780 · TK1151
Mitochondrion0.038
Rank 5 · TkA07G401780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00004AAA16-50 aa
PF01935DUF8718-83 aa
PF13514AAA_2721-65 aa
PF01926MMR_HSR143-83 aa
PF20703nSTAND147-158 aa
PF20720nSTAND3101-126 aa
PF13173AAA_14103-133 aa
PF02463SMC_N110-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G401780PF00004AAA16501.6e-0526.1
TkA07G401780PF01935DUF8718830.3111.8
TkA07G401780PF13514AAA_2721656.47.0
TkA07G401780PF01926MMR_HSR143833.3e-0627.9
TkA07G401780PF20703nSTAND1471581.49.2
TkA07G401780PF20720nSTAND31011260.02215.2
TkA07G401780PF13173AAA_141031330.001918.9
TkA07G401780PF02463SMC_N1101311.5e-1144.9
TkA07G401780PF13481AAA_251261760.00417.5
TkA07G401780PF03193RsgA_GTPase1612154.2e-0833.9
TkA07G401780PF03308MeaB1782190.2211.2
TkA07G401780PF00005ABC_tran1853484e-49167.5
TkA07G401780PF13555AAA_291882112.1e-0731.3
TkA07G401780PF12775AAA_71892130.1412.4
TkA07G401780PF00006ATP-synt_ab1902160.04414.1
TkA07G401780PF20703nSTAND11912121.49.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M1H3Arabidopsis thalianasp|Q9M1H3|AB4F_ARATH ABC transporter F family member 472.300%Swiss-ProtHigh

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