TkA07G400820 | RubberDandelionOmics

Gene overview

TkA07G400820

Reference: TK1151 Chr: Chr07 Coordinates: 100749131-100752086 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2411 bp · TkA07G400820|TK1151|cDNA

AACTAAACAAAATACACATGTTATAAAGTCTGTCTGAAGATTATAATAACACAACTATATGTCATATATATATCTTCTGCATACTGATATCTCACTTACACGCACACACATTTATTCCTTCAACAGAATCCTCTCTCCTCTTCTGGCCGGCTAAACGTTCTTATCGCCATCGTCACTCACCACCGATCCACAATTGCATTCTAAATAACCCTTTCTTCCGATTTCATTCATCTCCGGTTATCATTATTTGCAATTGGCTG...

CDS

Download CDS FASTA

1140 bp · TkA07G400820|TK1151|CDS

ATGTCATCTTCTTCGTCGAGTTCCTCTTCAACAACAACAACGACGTCGTCTAAAAATTCCGTGTTTACTCCTAGGAGCCGGTTTCCGTCGCCGAGCGTTTCACGAACGAATTCCGTAACGCCAGTATCTGCGGTGAGTAATAAGCGAGATCAATCAGCGGAACGACGGTATTTTGGAGATTTACGTACAGTTGTGACGTCGACGAGAGCGAAGGTGTCGACGAAAACCTCTGCAAGGAGTCTGTCGGTTTCGTTTCAAGG...

Protein

Download Protein FASTA

379 aa · TkA07G400820|TK1151|PROTEIN

MSSSSSSSSSTTTTTSSKNSVFTPRSRFPSPSVSRTNSVTPVSAVSNKRDQSAERRYFGDLRTVVTSTRAKVSTKTSARSLSVSFQGASFALPVSKVAKPVNSVLRNGILEWRKDAASPARTSNNSQLIEMKLSGSGTAGDDRALRNFMTTESKLKHDIEIPDIDETVNQLEYESDNSGHAFSDTESISSGSDVRGGGRRSVVVPARFWRETINLLRRVQPESVSPPLSKSNKPISGHKILDDDPKLSPGRSPFVPVGGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G400820`
TK1151 ID	TkA07G400820
OH-1004 ID	LXL04_030387
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 94.987 / OH-1004 62.718 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G400820

Location Chr07:100749131-100752086 (+)

Description Similar to SCO3: Protein SNOWY COTYLEDON 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49890`	QWRF motif-containing protein 2.	No verified direct reference in this release
`At3g19570`	Probable microtubule-associated peroxisomal protein required for chloroplast biogenesis and for the formation of the prolamellar body and prothylakoids in etioplasts.	No verified direct reference in this release
`At5g43160`	QWRF motif-containing protein 9.	No verified direct reference in this release
`At2g44190`	Microtubule-associated protein required for seed development and for microtubule function in the endosperm.	ENDOSPERM DEFECTIVE1 Is a Novel Microtubule-Associated Protein Essential for Seed Development in Arabidopsis.2009 · DOI: 10.1105/tpc.108.061812 Endosperm cellularization defines an important developmental transition for embryo development.2012 · DOI: 10.1242/dev.077057
`At3g60000`	QWRF motif-containing protein 6.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030387 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005880 nuclear microtubule Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT1G49890

ath:AT2G24070

ath:AT3G19570

ath:AT4G30710

ath:AT5G43160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.575

Rank 1 · TkA07G400820 · TK1151

Nucleus0.374

Rank 2 · TkA07G400820 · TK1151

Cell membrane0.176

Rank 3 · TkA07G400820 · TK1151

Endoplasmic reticulum0.038

Rank 4 · TkA07G400820 · TK1151

Plastid0.022

Rank 5 · TkA07G400820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04484QWRF7-106 aa

PF04484QWRF190-378 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G400820	`PF04484`	QWRF	7	106	1.3e-40	140.8
TkA07G400820	`PF04484`	QWRF	190	378	1.3e-40	140.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94AI1`	Arabidopsis thaliana	sp\|Q94AI1\|QWRF2_ARATH QWRF motif-containing protein 2	34.800%	Swiss-Prot	Medium
`Q8GXD9`	Arabidopsis thaliana	sp\|Q8GXD9\|SCO3_ARATH Protein SNOWY COTYLEDON 3	54.300%	Swiss-Prot	Low
`F4K4M0`	Arabidopsis thaliana	sp\|F4K4M0\|QWRF9_ARATH QWRF motif-containing protein 9	30.900%	Swiss-Prot	Medium
`O80588`	Arabidopsis thaliana	sp\|O80588\|EDE1_ARATH Protein ENDOSPERM DEFECTIVE 1	39.200%	Swiss-Prot	Low
`Q5BPM6`	Arabidopsis thaliana	sp\|Q5BPM6\|QWRF6_ARATH QWRF motif-containing protein 6	32.900%	Swiss-Prot	Low

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