TkA07G400330 | RubberDandelionOmics

Gene overview

TkA07G400330

Reference: TK1151 Chr: Chr07 Coordinates: 100605580-100607415 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1569 bp · TkA07G400330|TK1151|cDNA

ATGGGAACTCAGGCCGACGAATCCTTCCCCGGAGCTTGGCACTCCGATGCTCACGGCATCAGTCATCACAACCTCGCAAACACCCGATCAAACGTCTATTTCTCCCCAAAATTATTCTACCTCAGAATCCATGTCATCGAAGCTCAAGATCTCATCCCAGTTGACCGCTCTCGTCTCCCTGAATTTTACGTCCGGATTGCCCTCGGAAGCCAGATGCGAACCACCCGAATCTCACAAATCAAAAGCTTGAATCCCTCATG...

CDS

Download CDS FASTA

1569 bp · TkA07G400330|TK1151|CDS

ATGGGAACTCAGGCCGACGAATCCTTCCCCGGAGCTTGGCACTCCGATGCTCACGGCATCAGTCATCACAACCTCGCAAACACCCGATCAAACGTCTATTTCTCCCCAAAATTATTCTACCTCAGAATCCATGTCATCGAAGCTCAAGATCTCATCCCAGTTGACCGCTCTCGTCTCCCTGAATTTTACGTCCGGATTGCCCTCGGAAGCCAGATGCGAACCACCCGAATCTCACAAATCAAAAGCTTGAATCCCTCATG...

Protein

Download Protein FASTA

522 aa · TkA07G400330|TK1151|PROTEIN

MGTQADESFPGAWHSDAHGISHHNLANTRSNVYFSPKLFYLRIHVIEAQDLIPVDRSRLPEFYVRIALGSQMRTTRISQIKSLNPSWQEELMVVASEPLDEFLIISVEDRIGPGKDVCVGRTNVPVRRIPQRVDYRKALEPWDDDSEKKKEVKFSSKIQLKLCLDAGYHVLDESTYFSSDLQPSSKFLRKPSIGILELGILSAQNLPPMKMREGRMTDAYCVAKYGNKWVRTRTLLNTLTPRWNEQYTWEVYDPWMPLLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G400330`
TK1151 ID	TkA07G400330
OH-1004 ID	LXL04_030374
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	85.400
Protein coverage (%)	TK1151 100.000 / OH-1004 53.038 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G400330

Location Chr07:100605580-100607415 (+)

Description Similar to FTIP7: FT-interacting protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22610`	Regulates flowering time under long days.	Characterization of Multiple C2 Domain and Transmembrane Region Proteins in Arabidopsis.2018 · DOI: 10.1104/pp.17.01144
`At1g51570`	Required for proliferation and differentiation of shoot stem cells in the shoot apical meristem (SAM), thus determining the appropriate balance between the maintenance of shoot stem cells and their differentiation into other aboveground plant parts via the control of subcellular localization and intercellular trafficking of STM in the shoot apex.	FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.2018 · DOI: 10.1016/j.celrep.2018.04.033
`At5g12970`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release
`At3g57880`	Required for proliferation and differentiation of shoot stem cells in the shoot apical meristem (SAM), thus determining the appropriate balance between the maintenance of shoot stem cells and their differentiation into other aboveground plant parts via the control of subcellular localization and intercellular trafficking of STM in the shoot apex.	FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.2018 · DOI: 10.1016/j.celrep.2018.04.033

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0370600`	Promotes nuclear translocation of the transcription factor OSH1, which directly suppresses the auxin biosynthetic gene YUCCA4 during the late development of anthers.	OsFTIP7 determines auxin-mediated anther dehiscence in rice.2018 · DOI: 10.1038/s41477-018-0175-0

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030374 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009663 plasmodesma organization Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0010930 negative regulation of auxin mediated signaling pathway Biological Process

GO:0048574 long-day photoperiodism, flowering Biological Process

GO:1902182 shoot apical meristem development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

KEGG gene cross-reference

ath:AT1G22610

ath:AT3G57880

ath:AT4G11610

ath:AT5G48060

dosa:Os05g0370600

osa:4338582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.510

Rank 1 · TkA07G400330 · TK1151

Cell membrane0.249

Rank 2 · TkA07G400330 · TK1151

Cytoplasm0.168

Rank 3 · TkA07G400330 · TK1151

Golgi apparatus0.162

Rank 4 · TkA07G400330 · TK1151

Nucleus0.086

Rank 5 · TkA07G400330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00168C240-133 aa

PF00168C2194-261 aa

PF04842DUF639319-367 aa

PF19019Phlebo_G2_C320-361 aa

PF02453Reticulon320-377 aa

PF08372PRT_C321-359 aa

PF06398Pex24p337-503 aa

PF29941GspB339-370 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G400330	`PF00168`	C2	40	133	1e-31	109.9
TkA07G400330	`PF00168`	C2	194	261	1e-31	109.9
TkA07G400330	`PF04842`	DUF639	319	367	0.12	12.5
TkA07G400330	`PF19019`	Phlebo_G2_C	320	361	0.36	11.2
TkA07G400330	`PF02453`	Reticulon	320	377	0.36	11.4
TkA07G400330	`PF08372`	PRT_C	321	359	5.6e-80	267.3
TkA07G400330	`PF06398`	Pex24p	337	503	0.12	12.1
TkA07G400330	`PF29941`	GspB	339	370	1.1	10.1
TkA07G400330	`PF08372`	PRT_C	367	522	5.6e-80	267.3
TkA07G400330	`PF02453`	Reticulon	453	489	0.36	11.4
TkA07G400330	`PF29941`	GspB	453	496	1.1	10.1
TkA07G400330	`PF04842`	DUF639	454	492	0.12	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKA3`	Arabidopsis thaliana	sp\|Q9SKA3\|MCTP6_ARATH Multiple C2 domain and transmembrane region protein 6	63.400%	Swiss-Prot	High
`Q9C8H3`	Arabidopsis thaliana	sp\|Q9C8H3\|FTIP4_ARATH FT-interacting protein 4	54.600%	Swiss-Prot	High
`Q9LXU2`	Arabidopsis thaliana	sp\|Q9LXU2\|MCTP5_ARATH Multiple C2 domain and transmembrane region protein 5	55.400%	Swiss-Prot	High
`Q9M2R0`	Arabidopsis thaliana	sp\|Q9M2R0\|FTIP3_ARATH FT-interacting protein 3	55.000%	Swiss-Prot	High
`Q60EW9`	Oryza sativa subsp. japonica	sp\|Q60EW9\|FTIP7_ORYSJ FT-interacting protein 7	57.400%	Swiss-Prot	High

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