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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G396780
Reference: TK1151 Chr: Chr07 Coordinates: 99671675-99678420 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3361 bp · TkA07G396780|TK1151|cDNA

TAAGGCATAAACTTATGTCCTGCATGTGAAAAAGGCCTTTATAAGGTATCAAAGTTCTCTCCCAACTCCGTTTTAAACTTAAGACAACTTTCCTCCTCCCACCACCACCACCACCGCCGCCGCCACTGCTGCCAGATGGCAAGGAATGAGTGGATCAACGGCTACTTGGAAGCAATATTGGATGTGGGAGCAAATATACAGAGCCAAAAAGGGGTGGATACGAAGATGAAGATAGAAAAGCTTCAAGACAACGTGAAGCG...

CDS

Download CDS FASTA

3048 bp · TkA07G396780|TK1151|CDS

ATGGCAAGGAATGAGTGGATCAACGGCTACTTGGAAGCAATATTGGATGTGGGAGCAAATATACAGAGCCAAAAAGGGGTGGATACGAAGATGAAGATAGAAAAGCTTCAAGACAACGTGAAGCGTGATAAACACTTCAATCCCACTAATTACTTTGTTGAAGAAGTTGTAAATAGTGTTGATGAATCTGACCTCCATCGAACCTGGGTCAAGGTTATTGCGACTAGGAACACTCGTGAAAGAAGCGGTAGGCTTGAGAA...

Protein

Download Protein FASTA

1015 aa · TkA07G396780|TK1151|PROTEIN

MARNEWINGYLEAILDVGANIQSQKGVDTKMKIEKLQDNVKRDKHFNPTNYFVEEVVNSVDESDLHRTWVKVIATRNTRERSGRLENMCWRIWHLTRKKKQIALEGTQKLTHRRIEREKGRNDAEEDLLELSDGEKEKSEVVQVSKISRINSEMQIWTDVKQSRQIYIVLISIHGLVRGENMELGRDSDTGGQVKYVVELAKALADMEGVIRVDLLTRQIACPDVDYGYAEPIEMLSCPPEGSGNCGAYIVRIPCGPRDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G396780
TK1151 IDTkA07G396780
OH-1004 IDLXL04_030314
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G396780
LocationChr07:99671675-99678420 (+)
DescriptionSimilar to SPS4: Probable sucrose-phosphate synthase 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g10120 Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate (By similarity). No verified direct reference in this release
At1g04920 Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2WYE9 Plays a role in photosynthetic sucrose synthesis by catalyzing the rate-limiting step of sucrose biosynthesis from UDP-glucose and fructose- 6-phosphate. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030314 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005986 sucrose biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0046524 sucrose-phosphate synthase activity Molecular Function
KEGG gene cross-reference
ath:AT1G04920
ath:AT4G10120
dosa:Os01g0919400
osa:4324364
zma:542711
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.411
Rank 1 · TkA07G396780 · TK1151
Nucleus0.296
Rank 2 · TkA07G396780 · TK1151
Cell membrane0.130
Rank 3 · TkA07G396780 · TK1151
Plastid0.092
Rank 4 · TkA07G396780 · TK1151
Mitochondrion0.089
Rank 5 · TkA07G396780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08550GATA_AreA82-94 aa
PF00862GT-B_Sucrose_synth167-206 aa
PF13579Glyco_trans_4_4191-384 aa
PF13439Glyco_transf_4191-339 aa
PF00862GT-B_Sucrose_synth258-427 aa
PF08282Hydrolase_3339-379 aa
PF00534Glycos_transf_1469-641 aa
PF13692Glyco_trans_1_4473-630 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G396780PF08550GATA_AreA82940.002818.2
TkA07G396780PF00862GT-B_Sucrose_synth1672069.2e-1245.1
TkA07G396780PF13579Glyco_trans_4_41913844.1e-0731.2
TkA07G396780PF13439Glyco_transf_41913393.9e-0524.4
TkA07G396780PF00862GT-B_Sucrose_synth2584279.2e-1245.1
TkA07G396780PF08282Hydrolase_33393790.03214.7
TkA07G396780PF00534Glycos_transf_14696411.6e-2487.0
TkA07G396780PF13692Glyco_trans_1_44736301.1e-1558.8
TkA07G396780PF20706GT4-conflict5666050.004416.8
TkA07G396780PF08282Hydrolase_36056410.03214.7
TkA07G396780PF08282Hydrolase_37648170.03214.7
TkA07G396780PF05116S6PP7749481.1e-2075.1
TkA07G396780PF08282Hydrolase_38519410.03214.7
TkA07G396780PF13439Glyco_transf_48869073.9e-0524.4
TkA07G396780PF13579Glyco_trans_4_48879254.1e-0731.2
TkA07G396780PF13692Glyco_trans_1_49389681.1e-1558.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JLK2Arabidopsis thalianasp|F4JLK2|SPSA4_ARATH Sucrose-phosphate synthase 467.900%Swiss-ProtHigh
Q8RY24Arabidopsis thalianasp|Q8RY24|SPSA3_ARATH Probable sucrose-phosphate synthase 356.300%Swiss-ProtHigh
A2WYE9Oryza sativa subsp. indicasp|A2WYE9|SPSA1_ORYSI Probable sucrose-phosphate synthase 155.500%Swiss-ProtHigh

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