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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G395820
Reference: TK1151 Chr: Chr07 Coordinates: 99414761-99417427 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1507 bp · TkA07G395820|TK1151|cDNA

GCTCCTTCGGTTTCATCACGTCTTCCCTCGTCGCACCCCAAACGCAGGTTGCAATACAATAACCACCACAAGTACGATACCCCCAAAACAGACAAGATTAGCAGCAGGAAACCCCAGTTGTGATCGATTCTCTCTTTGTATATAAAATTTATCCGACCTGATTACAATTTGGGGATTGTGGTGACATAAACTATATAATATATTTTAAATTGAGGTGGATTTGGCTTGAATTCATCAGAGAATACAATGGCGTTAAGAGC...

CDS

Download CDS FASTA

984 bp · TkA07G395820|TK1151|CDS

ATGGCGTTAAGAGCACCTGTTGCAGGATTAAGTATCGCTTCAACAACATCAGCTTCATTACAGGATTCTTCCAAGAGAATTGGATTTTGCAGGCTCCCAACTTACAGGGCATCGTTCCTCGGTTCTGGAGTTGGAGCCCTAAAGCTTACGGTACAGCCAGCTCACCCTAGGAGTACAAGATGTTACAGCCATGGTGGGATTCGCATGAATCTTTTTGACCGTTTTGCACGAGTTGTTAAGTCATATGCAAATGCACTTGT...

Protein

Download Protein FASTA

327 aa · TkA07G395820|TK1151|PROTEIN

MALRAPVAGLSIASTTSASLQDSSKRIGFCRLPTYRASFLGSGVGALKLTVQPAHPRSTRCYSHGGIRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLIKMRQATAQVLASQKRMENKYKAAEQASEDWYKRAQLALGKGDEELAREALKRRKSYADNAASLRTQLDQQKGVVENLVSNTRLLESKIQEAKSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALNQLTTDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G395820
TK1151 IDTkA07G395820
OH-1004 IDLXL04_030300
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G395820
LocationChr07:99414761-99417427 (+)
DescriptionSimilar to Os01g0895100: Probable membrane-associated 30 kDa protein, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g65260 Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes.
VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid membrane formation.2001 · DOI: 10.1073/pnas.061500998
Vipp1 is required for basic thylakoid membrane formation but not for the assembly of thylakoid protein complexes.2007 · DOI: 10.1016/j.plaphy.2007.01.005

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0895100 Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030300 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010027 thylakoid membrane organization Biological Process
GO:0016050 vesicle organization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0009707 chloroplast outer membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
KEGG gene cross-reference
ath:AT1G65260
dosa:Os01g0895100
npu:Npun_R3963
osa:4324967
syn:sll0617
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984
Rank 1 · TkA07G395820 · TK1151
Mitochondrion0.030
Rank 2 · TkA07G395820 · TK1151
Cytoplasm0.024
Rank 3 · TkA07G395820 · TK1151
Peroxisome0.019
Rank 4 · TkA07G395820 · TK1151
Cell membrane0.014
Rank 5 · TkA07G395820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21663WipA_Phos58-158 aa
PF04012PspA_IM3070-283 aa
PF06419COG6_N95-134 aa
PF28258MSC_0620_UU05296-260 aa
PF16043DUF479597-131 aa
PF27865CHP0437697-256 aa
PF06419COG6_N153-219 aa
PF16043DUF4795165-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G395820PF21663WipA_Phos581580.1711.9
TkA07G395820PF04012PspA_IM30702831.3e-53182.6
TkA07G395820PF06419COG6_N951340.2312.3
TkA07G395820PF28258MSC_0620_UU052962600.2110.8
TkA07G395820PF16043DUF4795971310.211.7
TkA07G395820PF27865CHP04376972563.88.1
TkA07G395820PF06419COG6_N1532190.2312.3
TkA07G395820PF16043DUF47951652920.211.7
TkA07G395820PF21663WipA_Phos2152300.1711.9
TkA07G395820PF06419COG6_N2302590.2312.3
TkA07G395820PF27865CHP043763103233.88.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80796Arabidopsis thalianasp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic69.500%Swiss-ProtHigh
Q8S0J7Oryza sativa subsp. japonicasp|Q8S0J7|VIPP1_ORYSJ Membrane-associated protein VIPP1, chloroplastic71.300%Swiss-ProtHigh

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