TkA07G394780 | RubberDandelionOmics

Gene overview

TkA07G394780

Reference: TK1151 Chr: Chr07 Coordinates: 99165627-99167650 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

825 bp · TkA07G394780|TK1151|cDNA

ATGGATTCAAGCCCATTTAGGTACCCTCTCTAAAACTTCTCCATAGACCATAGTCGTTCATCAAACGACGGTCACCGGGACATAAACCAGCGTCGGATCCAGCATTTTCGAAAGGTTTGATCCGTATCCTTTTGCTGTTTGTCTTCTCTTTGATGTACTAAAACCTAATATCTTGATGATCTTATAATTCGACAAGCTAGCGTCAAGCATTTTCAAGCCAATGGCGGAGCCTGGGAATTCGATGTTATATTCTCTTCTTC...

CDS

Download CDS FASTA

366 bp · TkA07G394780|TK1151|CDS

ATGGCGGAGCCTGGGAATTCGATGTTATATTCTCTTCTTCTCTTTGTTGTCACTCTCTCACTTCAAGAAATGTATAGAGGGAAGTTAGCATCATCCGAACTGTTCACCATACTTGGAGGATTCACCAGTTCGCTTGTGTTTCTTTTCTTACTAACGTTCATTGGAAATTACCAGGAAACTGCAGGGGCAAAGACTGGATGGGGTGCAGTTATTGTAGCAGAGGTTGTTGCTCTTGTTGCTGCTGCCACTGTGCATCGAGT...

Protein

Download Protein FASTA

121 aa · TkA07G394780|TK1151|PROTEIN

MAEPGNSMLYSLLLFVVTLSLQEMYRGKLASSELFTILGGFTSSLVFLFLLTFIGNYQETAGAKTGWGAVIVAEVVALVAAATVHRVCITTCFLFSAAILYEVNQIAGVIVSKSESKGRRH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G394780`
TK1151 ID	TkA07G394780
OH-1004 ID	LXL04_030289
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 92.366 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G394780`
Location	Chr07:99165627-99167650 (-)
Description	Similar to Protein KRTCAP2 homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030289` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006487 protein N-linked glycosylation Biological Process GO:0005615 extracellular space Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0008250 oligosaccharyltransferase complex Cellular Component GO:0016020 membrane Cellular Component GO:0160226 oligosaccharyltransferase complex A Cellular Component GO:0008047 enzyme activator activity Molecular Function GO:0030674 protein-macromolecule adaptor activity Molecular Function
KEGG gene cross-reference	aag:5569432 bta:540389 cfa:480131 hsa:200185 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.609

Rank 1 · TkA07G394780 · TK1151

Golgi apparatus0.231

Rank 2 · TkA07G394780 · TK1151

Nucleus0.131

Rank 3 · TkA07G394780 · TK1151

Cytoplasm0.126

Rank 4 · TkA07G394780 · TK1151

Cell membrane0.094

Rank 5 · TkA07G394780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07213DAP101-19 aa

PF09775Keratin_assoc5-114 aa

PF07213DAP1044-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G394780	`PF07213`	DAP10	1	19	0.02	15.5
TkA07G394780	`PF09775`	Keratin_assoc	5	114	1.5e-39	135.3
TkA07G394780	`PF07213`	DAP10	44	94	0.02	15.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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