TkA07G391790 | RubberDandelionOmics

Gene overview

TkA07G391790

Reference: TK1151 Chr: Chr07 Coordinates: 98318185-98318784 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

600 bp · TkA07G391790|TK1151|cDNA

ATGCAAGGAAAAATGGTAATAATTAAACAAATACAAAATAGTTTTCCGATCGGATCATGCATTAGTAGATCGAACATCGATAACGAAGATTACGTTTCGTTTTTCTTGAAACACTTCAATTGGGCCGTGTTTGGTAACGAGCTTAAATGGTACTGGACCGAACCACAACAAGGGAGTTTCAACTACCGAGACGCGGACGACCTTCTCGAATTTTGTACCCGTAACAATATTTCCGTTCGCGGACACTGCATCTTTTGGGA...

CDS

Download CDS FASTA

600 bp · TkA07G391790|TK1151|CDS

ATGCAAGGAAAAATGGTAATAATTAAACAAATACAAAATAGTTTTCCGATCGGATCATGCATTAGTAGATCGAACATCGATAACGAAGATTACGTTTCGTTTTTCTTGAAACACTTCAATTGGGCCGTGTTTGGTAACGAGCTTAAATGGTACTGGACCGAACCACAACAAGGGAGTTTCAACTACCGAGACGCGGACGACCTTCTCGAATTTTGTACCCGTAACAATATTTCCGTTCGCGGACACTGCATCTTTTGGGA...

Protein

Download Protein FASTA

199 aa · TkA07G391790|TK1151|PROTEIN

MQGKMVIIKQIQNSFPIGSCISRSNIDNEDYVSFFLKHFNWAVFGNELKWYWTEPQQGSFNYRDADDLLEFCTRNNISVRGHCIFWDVDNTVQNWVKNLNKNDLAIAVNNRLTGLLTRYKNKFKHYDVNNEMLHGSFYRDRLGQEIRPNMFKLANKLDPSSLLFVNDYHVEDGCDTRSSPEKYIDQIFDLQEHGAPVVG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G391790`
TK1151 ID	TkA07G391790
OH-1004 ID	LXL04_030265
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 21.329 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G391790

Location Chr07:98318185-98318784 (+)

Description Similar to XYN1: Endo-1,4-beta-xylanase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g58370`	Binds to and hydrolyzes insoluble and soluble xylan substrates (By similarity).	A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome.2002 · DOI: 10.1093/pcp/pcf088
`At4g08160`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At1g10050`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030265 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0045493 xylan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0031176 endo-1,4-beta-xylanase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10050

ath:AT1G58370

ath:AT4G08160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.260

Rank 1 · TkA07G391790 · TK1151

Extracellular0.207

Rank 2 · TkA07G391790 · TK1151

Cytoplasm0.168

Rank 3 · TkA07G391790 · TK1151

Lysosome / Vacuole0.094

Rank 4 · TkA07G391790 · TK1151

Mitochondrion0.067

Rank 5 · TkA07G391790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00331Glyco_hydro_1010-197 aa

PF02449Glyco_hydro_4228-79 aa

PF08359TetR_C_476-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G391790	`PF00331`	Glyco_hydro_10	10	197	2.5e-34	119.6
TkA07G391790	`PF02449`	Glyco_hydro_42	28	79	0.028	14.5
TkA07G391790	`PF08359`	TetR_C_4	76	110	0.18	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8AWH8`	Arabidopsis thaliana	sp\|A0A1P8AWH8\|XYN1_ARATH Endo-1,4-beta-xylanase 1	71.100%	Swiss-Prot	High
`F4JG10`	Arabidopsis thaliana	sp\|F4JG10\|XYN3_ARATH Endo-1,4-beta-xylanase 3	68.700%	Swiss-Prot	High
`O80596`	Arabidopsis thaliana	sp\|O80596\|XYN2_ARATH Endo-1,4-beta-xylanase 2	65.300%	Swiss-Prot	High

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