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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G386760
Reference: TK1151 Chr: Chr07 Coordinates: 96941615-96957572 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

10388 bp · TkA07G386760|TK1151|cDNA

ATAATCTCGATCATCTTCAACCTCCACGATCGATCCTCCCTTGTTTCTTTTCCCTTTTCGTTAAATTCTTCACTAAGGTTTTGTGAACAAGAGGAATTAATTACCTTGGAGAAGAATCAGCATCCGATTACATAAGAAGTCTATAGATCTATTGAACGTTTACGTAGAACAGGAATTTTGTTGATCAATTTCATATATTCGATGGTTTCGCTACATAAGCGATGATCCGCAATCGGAAGGGCGGATTCAAGTTTCGGCGA...

CDS

Download CDS FASTA

8595 bp · TkA07G386760|TK1151|CDS

ATGTGGGTTTTACAGCTCCATGTTCTTTCTTTAGAGGTCCTCAGAGAAGCTGTATTTGGCAACTTGAGCAACTTGCAATTTCTCTGTGAAAATGGAAGAGTGCACAAATTTGCAAACAGCTTTTGTTTGCCAGCATTTGTGTTTCAAGAATTCATGCAACAAGGACGCAACACATTAGTGGAAGATGAATTAAAGAAAAACATGCAGAATACAACAGGAATAACAGAAACTTCTGTGTATAAACCTAGTTGTCAATATTG...

Protein

Download Protein FASTA

2864 aa · TkA07G386760|TK1151|PROTEIN

MWVLQLHVLSLEVLREAVFGNLSNLQFLCENGRVHKFANSFCLPAFVFQEFMQQGRNTLVEDELKKNMQNTTGITETSVYKPSCQYWSNYTVNLSKTLYSFIIPLEDLRSHQVQSGRSCFPFSTVYGELSIKFMMRVLLTVFPSIKAFSNQNELPSHLRIFLYALQHYVLFVFRKILVLSPSSLDVFRAEGVWDFIFSEHFYFGSGSTVIPEAYFNYSDDRPWSTEPFTRSKSTNKRVPSYETDILQTNVISVVEFAATL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G386760
TK1151 IDTkA07G386760
OH-1004 IDLXL04_030203
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 88.481
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G386760
LocationChr07:96941615-96957572 (+)
DescriptionSimilar to BCHB: BEACH domain-containing protein B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g58230 May be involved in the suppression of BCHC1 activity.
BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis.2015 · DOI: 10.1016/j.molp.2014.11.015

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030203 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000423 mitophagy Biological Process
GO:0034497 protein localization to phagophore assembly site Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0019901 protein kinase binding Molecular Function
KEGG gene cross-reference
ath:AT1G58230
ddi:DDB_G0280971
hsa:987
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.547
Rank 1 · TkA07G386760 · TK1151
Nucleus0.259
Rank 2 · TkA07G386760 · TK1151
Golgi apparatus0.159
Rank 3 · TkA07G386760 · TK1151
Lysosome / Vacuole0.108
Rank 4 · TkA07G386760 · TK1151
Cell membrane0.105
Rank 5 · TkA07G386760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28615DDB_G0281251164-261 aa
PF20425Neurobeachin266-680 aa
PF16057DUF4800343-364 aa
PF25175Beta-prop_WDR5345-371 aa
PF25173Beta-prop_WDR3_1st345-367 aa
PF15787DUF4704573-607 aa
PF13385Laminin_G_3695-813 aa
PF15787DUF4704931-1454 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G386760PF28615DDB_G02812511642612.8e-31108.6
TkA07G386760PF20425Neurobeachin2666802.3e-206686.5
TkA07G386760PF16057DUF48003433642.9e-0627.4
TkA07G386760PF25175Beta-prop_WDR53453712.2e-1970.6
TkA07G386760PF25173Beta-prop_WDR3_1st3453672.1e-1557.6
TkA07G386760PF15787DUF47045736073.3e-154515.0
TkA07G386760PF13385Laminin_G_36958132.4e-0628.5
TkA07G386760PF15787DUF470493114543.3e-154515.0
TkA07G386760PF13570Beta-prop_ACSF4149415043.1e-0524.2
TkA07G386760PF06469DUF1088180619020.002118.5
TkA07G386760PF16057DUF4800181919072.9e-0627.4
TkA07G386760PF14844PH_BEACH202320871.8e-1351.2
TkA07G386760PF14844PH_BEACH211221711.8e-1351.2
TkA07G386760PF20426NBCH_WD40216122008.9e-187620.8
TkA07G386760PF02138Beach221024862.7e-122408.2
TkA07G386760PF20426NBCH_WD40250828518.9e-187620.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I9T0Arabidopsis thalianasp|F4I9T0|BCHB_ARATH BEACH domain-containing protein B62.400%Swiss-ProtHigh

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