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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G357080
Reference: TK1151 Chr: Chr07 Coordinates: 89447230-89450416 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1927 bp · TkA07G357080|TK1151|cDNA

ATTTAACAAAAGAACTAAAAACCCTATACCCTCTCTTTCCTTCAGCCGGCAAACACATACGAACGTTCTCTTCATCATCGTTGGTTCCAACCCGCTTCCAACCTGCTCGCCGTCGCTTCCGAGTACGAGGACACTTGTGCAAATTGAGCCGATCTTCTCTGCAATGTTAAACCCTCAATAGAACCCTTCCTCGCCCCCTTTACTCGCCCCCTCTTCCACTGGATTCATCAAGCTCTACTCTTCCTCCATTCCAATTTCTG...

CDS

Download CDS FASTA

1344 bp · TkA07G357080|TK1151|CDS

ATGAAAGCTTTGAGACTAATCCAAACACTTGCTAATCAGTCTTCAAAACCCTTTAAAACCTCCAATCTCAATCCCACTTTTCTCTCTCGATTTTACGCATCCCAACCTCTACAAGAAAACCCAGTATCCGACACAGAAGAACCTCACACCACCAATACCAGTGCCTTCAGCTTCGACAGCAGCCATTACGAATTACCAAACCTGTCACTAGGTTTGGGCTTAGATGAGGCTGCAAATACTGAATCGAATTGGGACGAAAA...

Protein

Download Protein FASTA

447 aa · TkA07G357080|TK1151|PROTEIN

MKALRLIQTLANQSSKPFKTSNLNPTFLSRFYASQPLQENPVSDTEEPHTTNTSAFSFDSSHYELPNLSLGLGLDEAANTESNWDEKYRRKANKTIFGEEHEKLVKDKKKKKSKNERMLEQEEKRRRTVILSKVLLEAAVAPTDEEDDDDDDSEAVKMEDQLSLSVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVLGVMTKGKTQICFFDTPGLIMKKYGLPKPDMKVRVESAWSSIDLYDILVVIFDVDRHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G357080
TK1151 IDTkA07G357080
OH-1004 IDLXL04_029900
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G357080
LocationChr07:89447230-89450416 (+)
DescriptionSimilar to ERG: GTP-binding protein ERG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g30960 Has a crucial role in plant growth and development, possibly by influencing mitochondrial division. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029900 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000028 ribosomal small subunit assembly Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0019843 rRNA binding Molecular Function
GO:0043024 ribosomal small subunit binding Molecular Function
GO:0070181 small ribosomal subunit rRNA binding Molecular Function
GO:0097177 mitochondrial ribosome binding Molecular Function
KEGG gene cross-reference
ath:AT1G30960
bbt:BBta_4682
bra:BRADO4462
oca:OCAR_5843
ocg:OCA5_c21740
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.812
Rank 1 · TkA07G357080 · TK1151
Plastid0.141
Rank 2 · TkA07G357080 · TK1151
Nucleus0.066
Rank 3 · TkA07G357080 · TK1151
Cytoplasm0.040
Rank 4 · TkA07G357080 · TK1151
Cell membrane0.014
Rank 5 · TkA07G357080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01926MMR_HSR16-24 aa
PF00350Dynamin_N107-114 aa
PF00009GTP_EFTU109-129 aa
PF01926MMR_HSR1112-125 aa
PF03193RsgA_GTPase144-221 aa
PF00009GTP_EFTU164-193 aa
PF01926MMR_HSR1166-290 aa
PF02421FeoB_N166-331 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G357080PF01926MMR_HSR16242.5e-1763.7
TkA07G357080PF00350Dynamin_N1071140.03414.9
TkA07G357080PF00009GTP_EFTU1091291.6e-0525.3
TkA07G357080PF01926MMR_HSR11121252.5e-1763.7
TkA07G357080PF03193RsgA_GTPase1442215.5e-0730.3
TkA07G357080PF00009GTP_EFTU1641931.6e-0525.3
TkA07G357080PF01926MMR_HSR11662902.5e-1763.7
TkA07G357080PF02421FeoB_N1663315.3e-0626.8
TkA07G357080PF00350Dynamin_N1662050.03414.9
TkA07G357080PF04548AIG11682786.5e-0523.1
TkA07G357080PF00071Ras1693380.002818.0
TkA07G357080PF10662PduV-EutP1962030.01316.1
TkA07G357080PF00350Dynamin_N2052630.03414.9
TkA07G357080PF02492cobW2293120.1412.5
TkA07G357080PF00009GTP_EFTU2433371.6e-0525.3
TkA07G357080PF03193RsgA_GTPase2703375.5e-0730.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82653Arabidopsis thalianasp|O82653|ERG_ARATH GTP-binding protein ERG56.500%Swiss-ProtHigh

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