TkA07G355490 | RubberDandelionOmics

Gene overview

TkA07G355490

Reference: TK1151 Chr: Chr07 Coordinates: 88970272-88971441 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1140 bp · TkA07G355490|TK1151|cDNA

ATGACTATCAACCCACTCCTAATTTTGATCCTACTCTTTACACTCTCTCTTGCAATTAATGCTCAAGAAAGTGAATCCGAAAAAACAAGTATTGATGGCTTGAAAACCTACATTGTCCATGTAAAGAAACCAGAAGCTTCACTATCCACACTAAGTGATCAAGATCACAAGGCATACCATCGATCATTTCTTCCCTTTCGCCTTGCATCCATGGAGAAAGAGGAACCGTTACTTTACTCATACCAAAACGTAGTAAGTGG...

CDS

Download CDS FASTA

1140 bp · TkA07G355490|TK1151|CDS

ATGACTATCAACCCACTCCTAATTTTGATCCTACTCTTTACACTCTCTCTTGCAATTAATGCTCAAGAAAGTGAATCCGAAAAAACAAGTATTGATGGCTTGAAAACCTACATTGTCCATGTAAAGAAACCAGAAGCTTCACTATCCACACTAAGTGATCAAGATCACAAGGCATACCATCGATCATTTCTTCCCTTTCGCCTTGCATCCATGGAGAAAGAGGAACCGTTACTTTACTCATACCAAAACGTAGTAAGTGG...

Protein

Download Protein FASTA

379 aa · TkA07G355490|TK1151|PROTEIN

MTINPLLILILLFTLSLAINAQESESEKTSIDGLKTYIVHVKKPEASLSTLSDQDHKAYHRSFLPFRLASMEKEEPLLYSYQNVVSGFAARLTDTDIESMRKKDGFLSAHQERILKLQTTHTPTFLGLHQESGIWKDSNYGKGTIIGLLDGGIIPNHESFIDHGMPPPPSKWKGRCEFNASTCNNKLIASNSSMKEETPIDDDGHGTHTASTSSGGFVKNADALGGASGTAVGMAPYAHLAVYKICFGPDCLESDILAGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G355490`
TK1151 ID	TkA07G355490
OH-1004 ID	LXL04_029875
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.800
Protein coverage (%)	TK1151 99.208 / OH-1004 51.194 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G355490`
Location	Chr07:88970272-88971441 (-)
Description	Similar to SBTM4: Subtilisin-like protease 4
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_029875` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006508 proteolysis Biological Process GO:0009609 response to symbiotic bacterium Biological Process GO:0009610 response to symbiotic fungus Biological Process GO:0036377 arbuscular mycorrhizal association Biological Process GO:0005576 extracellular region Cellular Component GO:0005615 extracellular space Cellular Component GO:0048046 apoplast Cellular Component GO:0004252 serine-type endopeptidase activity Molecular Function
KEGG gene cross-reference	mtr:11443095 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.736

Rank 1 · TkA07G355490 · TK1151

Lysosome / Vacuole0.097

Rank 2 · TkA07G355490 · TK1151

Cytoplasm0.055

Rank 3 · TkA07G355490 · TK1151

Endoplasmic reticulum0.055

Rank 4 · TkA07G355490 · TK1151

Cell membrane0.043

Rank 5 · TkA07G355490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05922Inhibitor_I936-118 aa

PF00082Peptidase_S8141-344 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G355490	`PF05922`	Inhibitor_I9	36	118	2e-12	48.3
TkA07G355490	`PF00082`	Peptidase_S8	141	344	3e-24	86.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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