TkA07G348110 | RubberDandelionOmics

Gene overview

TkA07G348110

Reference: TK1151 Chr: Chr07 Coordinates: 86986733-86988410 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1073 bp · TkA07G348110|TK1151|cDNA

ATGCATTAAAAGTTGTGCCTTACACTTGACCCCGTCTCCCCAAGAAAGCAGTTAAAAGAAGACCCAAGAATTCCCAAAGACATTTCAACAACTCCTACTGAATACAAGTATCCAAGAAGCAGACTCTTCTTTTCAAAATCCATCTTTTTGCAGGTTCTTGAATTGCATTGAACCATCTTCAATGGAAGCTCGCAATTCCATCATTCTCATTTTCACAATCTTCACATTCATGGCCGGCGTTCTTGAAGGCAAATTCACAT...

CDS

Download CDS FASTA

714 bp · TkA07G348110|TK1151|CDS

ATGGAAGCTCGCAATTCCATCATTCTCATTTTCACAATCTTCACATTCATGGCCGGCGTTCTTGAAGGCAAATTCACATCACATACCTGCAACTACGATCAACCCCAAATCCATTTCCCATTTAAAGTCAATTCCTTCTGCAAAAACAAACAAACCATGATCAAATTCCCAAATTACGGAGATTTGGGCGTGAAATCCATCTCTTACGATCACAGAAAACTCACCCTCATAGACCCAAAAGATTGCGTATTTGAAGTGTT...

Protein

Download Protein FASTA

237 aa · TkA07G348110|TK1151|PROTEIN

MEARNSIILIFTIFTFMAGVLEGKFTSHTCNYDQPQIHFPFKVNSFCKNKQTMIKFPNYGDLGVKSISYDHRKLTLIDPKDCVFEVFLNLNLDPTPFRYYHVVRNYTYLNCSIDLLGSFEEIPCLSDSKHHVYVVESLLDVPSSCEGIKTVSIPFAYSSYVSDDSFGLDLTWDSTNLEEFSEAKRRWFGFQSIGEEIRMVILVVMVVGLACAKAYCWKKSESKKNEGEKLLGDLETL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G348110`
TK1151 ID	TkA07G348110
OH-1004 ID	LXL04_005754
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	25.400
Protein coverage (%)	TK1151 72.574 / OH-1004 39.545 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G348110`
Location	Chr07:86986733-86988410 (-)
Description	Similar to ATL21A: Putative RING-H2 finger protein ATL21A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005754` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0016567 protein ubiquitination Biological Process GO:0005576 extracellular region Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0030247 polysaccharide binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference	ath:AT2G25410 ath:AT2G46494 ath:AT2G46495 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.667

Rank 1 · TkA07G348110 · TK1151

Endoplasmic reticulum0.128

Rank 2 · TkA07G348110 · TK1151

Extracellular0.109

Rank 3 · TkA07G348110 · TK1151

Cytoplasm0.102

Rank 4 · TkA07G348110 · TK1151

Lysosome / Vacuole0.081

Rank 5 · TkA07G348110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind29-78 aa

PF13947GUB_WAK_bind143-160 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G348110	`PF13947`	GUB_WAK_bind	29	78	6e-05	24.1
TkA07G348110	`PF13947`	GUB_WAK_bind	143	160	6e-05	24.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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