TkA07G345390 | RubberDandelionOmics

Gene overview

TkA07G345390

Reference: TK1151 Chr: Chr07 Coordinates: 86353237-86354873 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · TkA07G345390|TK1151|cDNA

ATGCAAGAATACGCTACAAAAAATTTCGACTCTAAAAGCTATGAGTTTTCATTTCCCAATCACATCTTAACAGGTGTACGTTCTAACACCTTGGATTCAGCATTCTCAACCCATTCATCATCACCAGCCCGAGTTCTTAATAAACATTTAGGTTCTTCAGTTTACCTCAAACAGAGGGATCGATTCTTTAAATTTTCTGAAGATATTTATCTATCATCCCAAACTACAATAAACCCGGCTGGATTTGATCAGCGGCTTAT...

CDS

Download CDS FASTA

738 bp · TkA07G345390|TK1151|CDS

ATGCAAGAATACGCTACAAAAAATTTCGACTCTAAAAGCTATGAGTTTTCATTTCCCAATCACATCTTAACAGGTGTACGTTCTAACACCTTGGATTCAGCATTCTCAACCCATTCATCATCACCAGCCCGAGTTCTTAATAAACATTTAGGTTCTTCAGTTTACCTCAAACAGAGGGATCGATTCTTTAAATTTTCTGAAGATATTTATCTATCATCCCAAACTACAATAAACCCGGCTGGATTTGATCAGCGGCTTAT...

Protein

Download Protein FASTA

245 aa · TkA07G345390|TK1151|PROTEIN

MQEYATKNFDSKSYEFSFPNHILTGVRSNTLDSAFSTHSSSPARVLNKHLGSSVYLKQRDRFFKFSEDIYLSSQTTINPAGFDQRLIKSYKTKKWYTCVRQRHSGKWVVEIRLPHNQKKVWLGTYERPEIAAYAYDQAAYILRGNHAHLNFKDPTMARFIGDLQTLNSLKTAVENKICKKVKAKKCKNMEVKERGCVVAYDGSHDNQLSGELQPFAAMTEVVDGGCPLAMLSSYDLDLIREILAS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G345390`
TK1151 ID	TkA07G345390
OH-1004 ID	LXL04_029531
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	62.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G345390

Location Chr07:86353237-86354873 (-)

Description Similar to ERF062: Ethylene-responsive transcription factor ERF062

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64380`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g13620`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g71450`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g01250`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At2g31230`	May act as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029531 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009415 response to water Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G36060

ath:AT1G64380

ath:AT1G78080

ath:AT4G13620

ath:AT4G39780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · TkA07G345390 · TK1151

Cytoplasm0.118

Rank 2 · TkA07G345390 · TK1151

Cell membrane0.026

Rank 3 · TkA07G345390 · TK1151

Plastid0.018

Rank 4 · TkA07G345390 · TK1151

Endoplasmic reticulum0.017

Rank 5 · TkA07G345390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP295-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G345390	`PF00847`	AP2	95	144	1.4e-08	35.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7W2`	Arabidopsis thaliana	sp\|Q9C7W2\|ERF61_ARATH Ethylene-responsive transcription factor ERF061	40.100%	Swiss-Prot	Medium
`Q9SVQ0`	Arabidopsis thaliana	sp\|Q9SVQ0\|ERF62_ARATH Ethylene-responsive transcription factor ERF062	37.000%	Swiss-Prot	Medium
`Q9C9I2`	Arabidopsis thaliana	sp\|Q9C9I2\|ERF21_ARATH Ethylene-responsive transcription factor ERF021	53.400%	Swiss-Prot	Low
`Q1ECI2`	Arabidopsis thaliana	sp\|Q1ECI2\|ERF23_ARATH Ethylene-responsive transcription factor ERF023	51.700%	Swiss-Prot	Low
`Q8VYM0`	Arabidopsis thaliana	sp\|Q8VYM0\|ERF93_ARATH Ethylene-responsive transcription factor 15	31.500%	Swiss-Prot	Low

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