TkA07G341770 | RubberDandelionOmics

Gene overview

TkA07G341770

Reference: TK1151 Chr: Chr07 Coordinates: 85311258-85314594 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2139 bp · TkA07G341770|TK1151|cDNA

AAAGAGCCGTTTGTTCTTTGTCCCTACACTCATTCCTCTACTTTCTCTCCGTTGTTGATATGTAAAACCCACAAAAAAAAGTGTTCAAATTCCGTTGATTTCATAGTTTTTCTTCTTTTAGAGCAGCAAAAAACCTTCGAAAGTTCTTTCCAGTCCATGGCTACTTCTTCTAGCTTTATCTCGTGTGCCCTTTTCATCTACATTTCCGTGTTTGTAAGCTTCACGTCGGCTGAAGATCCGACTGTTACATACCATTTTGA...

CDS

Download CDS FASTA

1932 bp · TkA07G341770|TK1151|CDS

AAAGAGCCGTTTGTTCTTTGTCCCTACACTCATTCCTCTACTTTCTCTCCGTTGTTGATATGTAAAACCCACAAAAAAAAGTGTTCAAATTCCGTTGATTTCATAGTTTTTCTTCTTTTAGAGCAGCAAAAAACCTTCGAAAGTTCTTTCCAGTCCATGGCTACTTCTTCTAGCTTTATCTCGTGTGCCCTTTTCATCTACATTTCCGTGTTTGTAAGCTTCACGTCGGCTGAAGATCCGACTGTTACATACCATTTTGA...

Protein

Download Protein FASTA

643 aa · TkA07G341770|TK1151|PROTEIN

KEPFVLCPYTHSSTFSPLLICKTHKKKCSNSVDFIVFLLLEQQKTFESSFQSMATSSSFISCALFIYISVFVSFTSAEDPTVTYHFELSYITASPLGVPQQVIAINGKFPGPTINSTTNNNVVVNVRNKLDEDLLLTWAGVQQKRSSWQDGVLGTTCPIPPKWNWTYNFQVKDQIGSYFYFPSLNFQRASGGFGGFIINPRSVIPTPFDNPAGDIVILIGDWYIRNHTALRHTLDDGRDLGMPNGVLINGKGPYRYNDTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G341770`
TK1151 ID	TkA07G341770
OH-1004 ID	LXL04_005492
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.700
Protein coverage (%)	TK1151 88.180 / OH-1004 96.046 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G341770

Location Chr07:85311258-85314594 (-)

Description Similar to SKU5: Monocopper oxidase-like protein SKU5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12420`	May be a monocopper oxidase of unknown specificity.	No verified direct reference in this release
`At5g51480`	Monocopper oxidase-like protein SKS2.	No verified direct reference in this release
`At4g25240`	Monocopper oxidase-like protein SKS1.	No verified direct reference in this release
`At1g55560`	Probable oxidoreductase that may be involved in pollen tube growth.	Two Arabidopsis late pollen transcripts are detected in cytoplasmic granules.2017 · DOI: 10.1002/pld3.12

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005492 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009932 cell tip growth Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G55560

ath:AT4G12420

ath:AT4G25240

ath:AT5G51480

bna:106452325

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.369

Rank 1 · TkA07G341770 · TK1151

Extracellular0.317

Rank 2 · TkA07G341770 · TK1151

Cytoplasm0.118

Rank 3 · TkA07G341770 · TK1151

Endoplasmic reticulum0.117

Rank 4 · TkA07G341770 · TK1151

Lysosome / Vacuole0.089

Rank 5 · TkA07G341770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02018CBM_4_939-62 aa

PF07732Cu-oxidase_389-202 aa

PF00394Cu-oxidase100-140 aa

PF07731Cu-oxidase_2138-180 aa

PF00394Cu-oxidase214-368 aa

PF07731Cu-oxidase_2262-283 aa

PF07732Cu-oxidase_3267-342 aa

PF02018CBM_4_9267-283 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G341770	`PF02018`	CBM_4_9	39	62	0.54	11.3
TkA07G341770	`PF07732`	Cu-oxidase_3	89	202	1.6e-43	148.3
TkA07G341770	`PF00394`	Cu-oxidase	100	140	1.6e-45	155.8
TkA07G341770	`PF07731`	Cu-oxidase_2	138	180	5.5e-32	111.1
TkA07G341770	`PF00394`	Cu-oxidase	214	368	1.6e-45	155.8
TkA07G341770	`PF07731`	Cu-oxidase_2	262	283	5.5e-32	111.1
TkA07G341770	`PF07732`	Cu-oxidase_3	267	342	1.6e-43	148.3
TkA07G341770	`PF02018`	CBM_4_9	267	283	0.54	11.3
TkA07G341770	`PF02018`	CBM_4_9	323	359	0.54	11.3
TkA07G341770	`PF07732`	Cu-oxidase_3	379	401	1.6e-43	148.3
TkA07G341770	`PF00394`	Cu-oxidase	430	441	1.6e-45	155.8
TkA07G341770	`PF07731`	Cu-oxidase_2	452	588	5.5e-32	111.1
TkA07G341770	`PF02018`	CBM_4_9	530	552	0.54	11.3
TkA07G341770	`PF00394`	Cu-oxidase	543	568	1.6e-45	155.8
TkA07G341770	`PF00394`	Cu-oxidase	572	605	1.6e-45	155.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SU40`	Arabidopsis thaliana	sp\|Q9SU40\|SKU5_ARATH Monocopper oxidase-like protein SKU5	77.300%	Swiss-Prot	High
`Q9FHN6`	Arabidopsis thaliana	sp\|Q9FHN6\|SKS2_ARATH Monocopper oxidase-like protein SKS2	67.400%	Swiss-Prot	High
`Q8VXX5`	Arabidopsis thaliana	sp\|Q8VXX5\|SKS1_ARATH Monocopper oxidase-like protein SKS1	66.300%	Swiss-Prot	High
`Q9SMW3`	Arabidopsis thaliana	sp\|Q9SMW3\|SKS14_ARATH Protein SKU5 SIMILAR 14	46.700%	Swiss-Prot	Medium

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