Gene Card
Gene overview
cDNA / CDS / Protein Sequences
483 bp · TkA07G340530|TK1151|cDNA
ATGGGGCAAGCAATTCTAGCATGGCTCCTACTAATTAGCCTTACAATATGCCCAACACAATCTACCACCACTTTCATCCAGAAATCATGCAGCCAAACATTGTACCCTCAGCTTTGCAACATGTACCTATCTCGTTTCTCATCACGGATCAAGACCAGTCCAAGACTCTTAGCCCAGACAGCCCTTGCAGCCACCCTCAGCAGCACTCGAACAACTTCCAAAAACCTGACGACTTATTCAAGAACCCACAAATTGACGAA...
483 bp · TkA07G340530|TK1151|CDS
ATGGGGCAAGCAATTCTAGCATGGCTCCTACTAATTAGCCTTACAATATGCCCAACACAATCTACCACCACTTTCATCCAGAAATCATGCAGCCAAACATTGTACCCTCAGCTTTGCAACATGTACCTATCTCGTTTCTCATCACGGATCAAGACCAGTCCAAGACTCTTAGCCCAGACAGCCCTTGCAGCCACCCTCAGCAGCACTCGAACAACTTCCAAAAACCTGACGACTTATTCAAGAACCCACAAATTGACGAA...
Protein
Download Protein FASTA160 aa · TkA07G340530|TK1151|PROTEIN
MGQAILAWLLLISLTICPTQSTTTFIQKSCSQTLYPQLCNMYLSRFSSRIKTSPRLLAQTALAATLSSTRTTSKNLTTYSRTHKLTKRELAAMKDCLEELSDSAYELHISMVEMDDDTCTDGFSGNNMNGEVKTVVRKQVLNIAHLASIALSFVNNYAKG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G340530 |
|---|---|
| TK1151 ID | TkA07G340530 |
| OH-1004 ID | LXL04_029717 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G340530 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:85032721-85033278 (+) | |||||||||
| Description | Similar to PMEI11: Pectinesterase inhibitor 11 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009641 shade avoidance Biological Process GO:0009827 plant-type cell wall modification Biological Process GO:0071669 plant-type cell wall organization or biogenesis Biological Process GO:0005576 extracellular region Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0048046 apoplast Cellular Component GO:0004857 enzyme inhibitor activity Molecular Function GO:0046910 pectinesterase inhibitor activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G62760 ath:AT1G62770 ath:AT3G47380 ath:AT4G25260 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09852DUF20794-72 aaPF04043PMEI25-152 aaPF28544Helical_needle33-117 aaPF09483HpaP49-111 aaPF28662PROH4_C60-118 aaPF20453DUF670782-111 aaPF09483HpaP128-146 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G340530 | PF09852 | DUF2079 | 4 | 72 | 0.049 | 13.4 |
| TkA07G340530 | PF04043 | PMEI | 25 | 152 | 9.8e-21 | 75.2 |
| TkA07G340530 | PF28544 | Helical_needle | 33 | 117 | 0.0078 | 16.8 |
| TkA07G340530 | PF09483 | HpaP | 49 | 111 | 0.045 | 14.6 |
| TkA07G340530 | PF28662 | PROH4_C | 60 | 118 | 0.05 | 14.8 |
| TkA07G340530 | PF20453 | DUF6707 | 82 | 111 | 0.13 | 12.4 |
| TkA07G340530 | PF09483 | HpaP | 128 | 146 | 0.045 | 14.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.