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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G336580
Reference: TK1151 Chr: Chr07 Coordinates: 84046610-84052284 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3161 bp · TkA07G336580|TK1151|cDNA

TAGAAACAGAACAAAGAAAAATCAAACCAACCGAAAAGCTGTGACGAGTCTGACTCATCTTTCATTCTCACCTCTCTAAATTCTTCTCATTTCTGTGATATATATATATATATATATACTCTCTAAGATTGCACGCAGAAACCCACTAAAGATTGCAGAAACACATATTCGTAGGTATTCTTTGATGGTGGAACTTCCGACCCGAATTGGGATTCTTCCGTTCAGGAACAAAGTTTTGTTGCCTGGCGCAATCATCCGAA...

CDS

Download CDS FASTA

2568 bp · TkA07G336580|TK1151|CDS

ATGGTGGAACTTCCGACCCGAATTGGGATTCTTCCGTTCAGGAACAAAGTTTTGTTGCCTGGCGCAATCATCCGAATTCAATGCACTTCTCCGAGCAGTGTGAAATTGGTGGAACAAGAATTATGGCAGAGGGAGGAGAAAGGGTTGATTGGCATTCTGCCTGTTCGAGATATTGCCGAGGGTTCCATAGTGACACAAGGAGCTGATTTGGGTGATAAAAGCTCCAAGAATCAACAAGTCAAATCAGATTCTCACAAACT...

Protein

Download Protein FASTA

855 aa · TkA07G336580|TK1151|PROTEIN

MVELPTRIGILPFRNKVLLPGAIIRIQCTSPSSVKLVEQELWQREEKGLIGILPVRDIAEGSIVTQGADLGDKSSKNQQVKSDSHKLDGKNQQEPNWHTRGVAARALHLSRGVEKPSGRVTYIVVLEGLSRFSVEELNTRGTYTTARISPLDMTKTEMEQIEQDADFIALSRQFKLTAMELITALEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLAMLDSVDVKVRLSKATELVDRHLQMRAIKEELGDNDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G336580
TK1151 IDTkA07G336580
OH-1004 IDLXL04_029688
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G336580
LocationChr07:84046610-84052284 (-)
DescriptionSimilar to Lon protease homolog 2, peroxisomal
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g47040 ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix (By similarity).
Arabidopsis LON2 is necessary for peroxisomal function and sustained matrix protein import.2009 · DOI: 10.1104/pp.109.142505

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BDV1 ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. No verified direct reference in this release
Os09g0533400 ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029688 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process
GO:0006625 protein targeting to peroxisome Biological Process
GO:0009408 response to heat Biological Process
GO:0016485 protein processing Biological Process
GO:0016558 protein import into peroxisome matrix Biological Process
GO:0016560 protein import into peroxisome matrix, docking Biological Process
GO:0032042 mitochondrial DNA metabolic process Biological Process
GO:0048527 lateral root development Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005782 peroxisomal matrix Cellular Component
GO:0070013 intracellular organelle lumen Cellular Component
KEGG gene cross-reference
ath:AT5G47040
dosa:Os09g0533400
zma:732820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.430
Rank 1 · TkA07G336580 · TK1151
Cytoplasm0.234
Rank 2 · TkA07G336580 · TK1151
Mitochondrion0.202
Rank 3 · TkA07G336580 · TK1151
Nucleus0.121
Rank 4 · TkA07G336580 · TK1151
Plastid0.076
Rank 5 · TkA07G336580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02190LON_substr_bdg10-244 aa
PF07728AAA_5116-170 aa
PF00005ABC_tran117-117 aa
PF13207AAA_17163-225 aa
PF13476AAA_23184-270 aa
PF00931NB-ARC244-269 aa
PF03193RsgA_GTPase328-393 aa
PF01695IstB_IS21329-400 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G336580PF02190LON_substr_bdg102449.3e-29101.5
TkA07G336580PF07728AAA_51161701.4e-0835.5
TkA07G336580PF00005ABC_tran1171170.1813.1
TkA07G336580PF13207AAA_171632250.9510.5
TkA07G336580PF13476AAA_231842700.07614.4
TkA07G336580PF00931NB-ARC2442690.06413.5
TkA07G336580PF03193RsgA_GTPase3283930.005617.2
TkA07G336580PF01695IstB_IS213294000.01215.8
TkA07G336580PF08298AAA_PrkA3373880.001318.5
TkA07G336580PF05496RuvB_N3384010.0004320.8
TkA07G336580PF00931NB-ARC3583850.06413.5
TkA07G336580PF24883NPHP3_N3603880.03615.0
TkA07G336580PF13476AAA_233633950.07614.4
TkA07G336580PF13191AAA_163653930.03415.4
TkA07G336580PF20720nSTAND33653870.03914.4
TkA07G336580PF13401AAA_223664410.02715.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64948Arabidopsis thalianasp|O64948|LONP2_ARATH Lon protease homolog 2, peroxisomal75.900%Swiss-ProtHigh
B8BDV1Oryza sativa subsp. indicasp|B8BDV1|LONP2_ORYSI Lon protease homolog 2, peroxisomal75.700%Swiss-ProtHigh
Q0J032Oryza sativa subsp. japonicasp|Q0J032|LONP2_ORYSJ Lon protease homolog 2, peroxisomal75.400%Swiss-ProtHigh

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