TkA07G326940 | RubberDandelionOmics

Gene overview

TkA07G326940

Reference: TK1151 Chr: Chr07 Coordinates: 81807939-81810193 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1881 bp · TkA07G326940|TK1151|cDNA

TCTATCCAATTTCGACATAAATTATATAGATATCGGTGGTGGGTTTTCAGATTACAGATAGGGTTCGTGTAGGTGTAGCTTTTATTAGGTTTTCCCTCTACTTCTAGCGCTATATAAACCATAATCGGTCCTCTTCAGCCCCCTTCACTTAGCTGCTCTCCGGCGAATCACCGCCGTAGCCCTCCGTAAACACAAACCTTCTTATATCTCGACAAATCGCACAGTAGTTGTGCTTAAATGCGCATGATAGAAAGAAAGAA...

CDS

Download CDS FASTA

966 bp · TkA07G326940|TK1151|CDS

ATGGAGGATGCGATACTTGACGAGATTATCAGGAAGCTTTTGGATGCCAAGGGTGGACGTGTTCCGAAGCAGGTGCAGATCACGGAGGCGGAGATTCGGCAGCTTTGTATTGCCGCGAAGGAGGTTTTTCTCAGCCAACCTAATTTGCTCGAACTTGAAGCTCCTATCAAGATTTGTGGTGACATCCATGGACAATACTCCGACCTCTTACGTTTATTCGAGTACGGTGGCTACCCTCCAGAATCAAACTACTTATTTCT...

Protein

Download Protein FASTA

321 aa · TkA07G326940|TK1151|PROTEIN

MEDAILDEIIRKLLDAKGGRVPKQVQITEAEIRQLCIAAKEVFLSQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPESNYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVSALIDEKILCMHGGLSPDLKNLDQIRNIARPVDVPDQGLLCDLLWADPDREMEGWGENDRGVSYTFGADKVAEYLEKHDLDLICRAHQVVEDGYEFFASRQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G326940`
TK1151 ID	TkA07G326940
OH-1004 ID	LXL04_021538
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	77.900
Protein coverage (%)	TK1151 98.131 / OH-1004 96.970 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G326940

Location Chr07:81807939-81810193 (+)

Description Similar to Os03g0268000: Serine/threonine-protein phosphatase PP1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11240`	Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro.	No verified direct reference in this release
`At1g64040`	Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0268000`	Serine/threonine-protein phosphatase PP1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021538 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006470 protein dephosphorylation Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0010161 red light signaling pathway Biological Process

GO:0016311 dephosphorylation Biological Process

GO:0000164 protein phosphatase type 1 complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G29400

ath:AT2G39840

dosa:Os03g0268000

nta:107829724

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.673

Rank 1 · TkA07G326940 · TK1151

Nucleus0.570

Rank 2 · TkA07G326940 · TK1151

Cell membrane0.056

Rank 3 · TkA07G326940 · TK1151

Mitochondrion0.047

Rank 4 · TkA07G326940 · TK1151

Endoplasmic reticulum0.043

Rank 5 · TkA07G326940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16891STPPase_N6-53 aa

PF00149Metallophos55-248 aa

PF16891STPPase_N233-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G326940	`PF16891`	STPPase_N	6	53	3.1e-20	73.1
TkA07G326940	`PF00149`	Metallophos	55	248	4.1e-50	171.6
TkA07G326940	`PF16891`	STPPase_N	233	243	3.1e-20	73.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P48486`	Arabidopsis thaliana	sp\|P48486\|PP16_ARATH Serine/threonine-protein phosphatase PP1 isozyme 6	85.900%	Swiss-Prot	High
`P48483`	Arabidopsis thaliana	sp\|P48483\|PP13_ARATH Serine/threonine-protein phosphatase PP1 isozyme 3	83.100%	Swiss-Prot	High
`P48489`	Oryza sativa subsp. japonica	sp\|P48489\|PP1_ORYSJ Serine/threonine-protein phosphatase PP1	81.200%	Swiss-Prot	High

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