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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G278080
Reference: TK1151 Chr: Chr07 Coordinates: 69574760-69579542 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2672 bp · TkA07G278080|TK1151|cDNA

TATCAGTCCAAGTTGCAAGAACCAAGAAGTGAGCAGCAACGCAACCCGAGCGTCGGTCGCAAGTACGGACAGTCTTTTCCCACTTGCCAATCTCTAATCTCTTCCCTTCACGCCCCCTTTTTAATCCCTAAGCATATTCTCTCTCTTTCATCATCACACATTCTCTCTTTCTTCAATCGCACAAATCTAGATTGTTTTCTCTCTCTCTTCCCCTACTTTACACCTCAATCTTTCAATTCCTACTTGCTCAATCGCAGATC...

CDS

Download CDS FASTA

1776 bp · TkA07G278080|TK1151|CDS

ATGGGCATTCTCCTTACAGTTTTTCAGGGGCCATTGCTATTCTACTTTCTATCACTCTGCTTTCTATTCAACAAACTCCAAGGACTCACTAGTGATGGTGAGGCTCTTGTAAACTTTCGAACAAACATTATTAGTTCGGATGGTTTGCTTCGTCAATGGAGGCCAGAAGATCCTGATCCATGTGAGTGGAAAGGGGTTACATGTGATTTAAAGACCAAAAGAGTTGTCTATTTGAATCTTTCTAATCACAAGTTGAGTGG...

Protein

Download Protein FASTA

591 aa · TkA07G278080|TK1151|PROTEIN

MGILLTVFQGPLLFYFLSLCFLFNKLQGLTSDGEALVNFRTNIISSDGLLRQWRPEDPDPCEWKGVTCDLKTKRVVYLNLSNHKLSGPVSPDIGKLDRLKFLDLHYNNFYGAIPPELGNCTELQGLFLQNNYLSGIIPTEIGNLSNLQTLDISSNSLSGSIPTSIGNLKSLLNFNVSNNFLSGPIPSDGVFDKFGTATFLGNRGLCGKHINQSCKDDDGGSSGSQPTGSQNVKKNSGRLLISASATVGALLLVALMCFWG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G278080
TK1151 IDTkA07G278080
OH-1004 IDLXL04_029134
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G278080
LocationChr07:69574760-69579542 (-)
DescriptionSimilar to FEI1: LRR receptor-like serine/threonine-protein kinase FEI 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31420 Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1- aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).
Two leucine-rich repeat receptor kinases mediate signaling, linking cell wall biosynthesis and ACC synthase in Arabidopsis.2008 · DOI: 10.1105/tpc.108.063354
At2g35620 Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1- aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).
Two leucine-rich repeat receptor kinases mediate signaling, linking cell wall biosynthesis and ACC synthase in Arabidopsis.2008 · DOI: 10.1105/tpc.108.063354
At1g78530 Receptor-like serine/threonine-protein kinase At1g78530. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BB68 LRR receptor kinase involved in defense response. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029134 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009664 plant-type cell wall organization Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009832 plant-type cell wall biogenesis Biological Process
GO:0010192 mucilage biosynthetic process Biological Process
GO:0010262 somatic embryogenesis Biological Process
GO:0030154 cell differentiation Biological Process
GO:0040008 regulation of growth Biological Process
GO:0045089 positive regulation of innate immune response Biological Process
GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process
GO:1900150 regulation of defense response to fungus Biological Process
KEGG gene cross-reference
ath:AT1G31420
ath:AT2G35620
dosa:Os04g0457800
dosa:Os08g0174700
osa:4336035
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.869
Rank 1 · TkA07G278080 · TK1151
Endoplasmic reticulum0.091
Rank 2 · TkA07G278080 · TK1151
Cytoplasm0.064
Rank 3 · TkA07G278080 · TK1151
Nucleus0.039
Rank 4 · TkA07G278080 · TK1151
Lysosome / Vacuole0.027
Rank 5 · TkA07G278080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_230-69 aa
PF13855LRR_874-109 aa
PF12799LRR_475-113 aa
PF00560LRR_176-96 aa
PF23598LRR_1477-130 aa
PF25013LRR_Zer-195-156 aa
PF00560LRR_198-120 aa
PF12799LRR_498-135 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G278080PF08263LRRNT_230692.1e-1144.6
TkA07G278080PF13855LRR_8741099.3e-0832.4
TkA07G278080PF12799LRR_4751134.8e-0730.5
TkA07G278080PF00560LRR_176968e-1552.5
TkA07G278080PF23598LRR_14771301.8e-0937.5
TkA07G278080PF25013LRR_Zer-1951560.09513.6
TkA07G278080PF00560LRR_1981208e-1552.5
TkA07G278080PF12799LRR_4981354.8e-0730.5
TkA07G278080PF23598LRR_141171781.8e-0937.5
TkA07G278080PF12799LRR_41211584.8e-0730.5
TkA07G278080PF13855LRR_81221799.3e-0832.4
TkA07G278080PF00560LRR_11231448e-1552.5
TkA07G278080PF00560LRR_11461688e-1552.5
TkA07G278080PF12799LRR_41461814.8e-0730.5
TkA07G278080PF00560LRR_11711878e-1552.5
TkA07G278080PF12799LRR_43003074.8e-0730.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGF4Arabidopsis thalianasp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 180.300%Swiss-ProtHigh
C0LGL9Arabidopsis thalianasp|C0LGL9|FEI2_ARATH LRR receptor-like serine/threonine-protein kinase FEI 278.300%Swiss-ProtHigh
Q9SYM9Arabidopsis thalianasp|Q9SYM9|Y1853_ARATH Receptor-like serine/threonine-protein kinase At1g7853045.300%Swiss-ProtMedium
B8BB68Oryza sativa subsp. indicasp|B8BB68|BAK1_ORYSI LRR receptor kinase BAK143.400%Swiss-ProtMedium

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