TkA07G273590 | RubberDandelionOmics

Gene overview

TkA07G273590

Reference: TK1151 Chr: Chr07 Coordinates: 68388537-68390991 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1152 bp · TkA07G273590|TK1151|cDNA

ATGGATGCTGAATCTTACTCGTCCTTAGAATTACTACAGCAGTTTCGCCAGTTTACGATTTCTGAGTTTCACTTAGCAACCCGCAACTTTGACGAGTCATTGGTGATCGGGCGTGGGGGTTTTGGCATGGTTTACAAAGGAATCATCACTAATGGGGAAACTCATCTGGTTGCGGCAATTAAGCGCCTCGATTCGACCTCTAATCAAGGACCAGCTGAGTTCTGGGCGGAAGTTCAAATGCTTTCTAATTTAAGGCACTG...

CDS

Download CDS FASTA

1152 bp · TkA07G273590|TK1151|CDS

ATGGATGCTGAATCTTACTCGTCCTTAGAATTACTACAGCAGTTTCGCCAGTTTACGATTTCTGAGTTTCACTTAGCAACCCGCAACTTTGACGAGTCATTGGTGATCGGGCGTGGGGGTTTTGGCATGGTTTACAAAGGAATCATCACTAATGGGGAAACTCATCTGGTTGCGGCAATTAAGCGCCTCGATTCGACCTCTAATCAAGGACCAGCTGAGTTCTGGGCGGAAGTTCAAATGCTTTCTAATTTAAGGCACTG...

Protein

Download Protein FASTA

383 aa · TkA07G273590|TK1151|PROTEIN

MDAESYSSLELLQQFRQFTISEFHLATRNFDESLVIGRGGFGMVYKGIITNGETHLVAAIKRLDSTSNQGPAEFWAEVQMLSNLRHCHLVSLIGYCNDGEEMIIIYEYMPHGTLEGHLHKFQSHLPWMRRLKICIGAAHGLDYLHTGTGIMHGIIHREVKRSNILLDEHWAAKISDFGLSKIGPINQPATYVNTFVKGTFGYLDPDYYATGRLTRKSDAYAFGVVLFEVLSGKQAVDRSLDEEHWGLVNWAQVSIREGRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G273590`
TK1151 ID	TkA07G273590
OH-1004 ID	LXL04_001342
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.700
Protein coverage (%)	TK1151 91.123 / OH-1004 54.118 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G273590

Location Chr07:68388537-68390991 (+)

Description Similar to SOBIR1: Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001342 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT2G31880

ath:AT3G51550

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.490

Rank 1 · TkA07G273590 · TK1151

Cytoplasm0.380

Rank 2 · TkA07G273590 · TK1151

Nucleus0.248

Rank 3 · TkA07G273590 · TK1151

Endoplasmic reticulum0.048

Rank 4 · TkA07G273590 · TK1151

Golgi apparatus0.043

Rank 5 · TkA07G273590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr35-304 aa

PF00069Pkinase35-302 aa

PF00069Pkinase341-362 aa

PF07714PK_Tyr_Ser-Thr350-362 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G273590	`PF07714`	PK_Tyr_Ser-Thr	35	304	1.3e-47	163.0
TkA07G273590	`PF00069`	Pkinase	35	302	1e-41	143.8
TkA07G273590	`PF00069`	Pkinase	341	362	1e-41	143.8
TkA07G273590	`PF07714`	PK_Tyr_Ser-Thr	350	362	1.3e-47	163.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	51.600%	Swiss-Prot	High
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	53.000%	Swiss-Prot	High
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	50.700%	Swiss-Prot	High
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	50.300%	Swiss-Prot	High
`Q9SR05`	Arabidopsis thaliana	sp\|Q9SR05\|ANX1_ARATH Receptor-like protein kinase ANXUR1	51.000%	Swiss-Prot	High

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