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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G270330
Reference: TK1151 Chr: Chr07 Coordinates: 67593716-67601844 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5652 bp · TkA07G270330|TK1151|cDNA

ATCCTTCTCGAGGCCTGTCGCAAAGTTCCCCAAAAGTTGTAGGGAAACACATTAACACACATTCGCACGCCTCTCATATAAACTACTCTTCTCAAACCCAGTCGCACCACCGAATTCCCTTTCAATTCAGAATCAATACATTCAACAATTTGTGTATATATATCGCCGCGATTCGATCCTACCTCAATTAATCATCTACAAATTTGTTCGATAATGGAGGCGGCTGCAAACAATTTTCAAACGGAAGGAGCTGCGGCGCC...

CDS

Download CDS FASTA

5484 bp · TkA07G270330|TK1151|CDS

ATGGAGGCGGCTGCAAACAATTTTCAAACGGAAGGAGCTGCGGCGCCACCCCCACCGCCACCACCATCTGAACCGATTCCTCCGGTGGAAGAAGATGACGAAGATGAGGAATATGAAGAGGAAGAAGAGGAGGAGGATGATGACGAGGAGGAAACAAATAACGAAGACGAAATTCTGATAGCGAAAGCCCAGGGACTGATAGACAAGATCACCGCCTCTCCTGATAACCCTAAGCCTAGCTGTCTTCATGCCCTAGCCTC...

Protein

Download Protein FASTA

1827 aa · TkA07G270330|TK1151|PROTEIN

MEAAANNFQTEGAAAPPPPPPPSEPIPPVEEDDEDEEYEEEEEEEDDDEEETNNEDEILIAKAQGLIDKITASPDNPKPSCLHALASILETQESRYMEETGHSSLNNGRVSYNIGRLGNLLRDNDEFFELISVKFLSENRYTISVQAAALRLLFSCSLTWMYPHVFEETVLEHIKGWVMDGPTRSSTEDHKGKNGSAVKQASDSEMLKTYSTGLLAVCLAGGGQVVEDVLTSGLSAKLMRYLRIRVLGEASTSQKESNFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G270330
TK1151 IDTkA07G270330
OH-1004 IDLXL04_029076
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 99.945 / OH-1004 93.882
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G270330
LocationChr07:67593716-67601844 (+)
DescriptionSimilar to DCAF1: DDB1- and CUL4-associated factor homolog 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g31160 Component of the CUL4-RBX1-DDB1-DCAF1 E3 ubiquitin-protein ligase complex, DCAF1 may function as the substrate recognition module within this complex.
Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.2008 · DOI: 10.1105/tpc.108.058891

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029076 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009908 flower development Biological Process
GO:0010154 fruit development Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0035212 cell competition in a multicellular organism Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0043687 post-translational protein modification Biological Process
GO:0045732 positive regulation of protein catabolic process Biological Process
GO:0048366 leaf development Biological Process
GO:0048367 shoot system development Biological Process
KEGG gene cross-reference
ath:AT4G31160
hsa:9730
mmu:321006
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.666
Rank 1 · TkA07G270330 · TK1151
Cytoplasm0.321
Rank 2 · TkA07G270330 · TK1151
Cell membrane0.043
Rank 3 · TkA07G270330 · TK1151
Mitochondrion0.034
Rank 4 · TkA07G270330 · TK1151
Lysosome / Vacuole0.031
Rank 5 · TkA07G270330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27635Mahjong_helical204-220 aa
PF27635Mahjong_helical493-640 aa
PF27635Mahjong_helical669-695 aa
PF27600DCAF1_helical735-917 aa
PF27600DCAF1_helical981-1014 aa
PF27601DCAF1_4th996-1101 aa
PF27600DCAF1_helical1037-1089 aa
PF08513LisH1115-1141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G270330PF27635Mahjong_helical2042205e-1866.6
TkA07G270330PF27635Mahjong_helical4936405e-1866.6
TkA07G270330PF27635Mahjong_helical6696955e-1866.6
TkA07G270330PF27600DCAF1_helical7359171.4e-50172.4
TkA07G270330PF27600DCAF1_helical98110141.4e-50172.4
TkA07G270330PF27601DCAF1_4th99611013.4e-2692.1
TkA07G270330PF27600DCAF1_helical103710891.4e-50172.4
TkA07G270330PF08513LisH111511410.002718.3
TkA07G270330PF24951LisH_PAC1112111440.1612.5
TkA07G270330PF27635Mahjong_helical118611995e-1866.6
TkA07G270330PF08513LisH132213320.002718.3
TkA07G270330PF24807WD40_CDC20-Fz140914820.06213.3
TkA07G270330PF23381Beta-prop_IFT122_1st141214850.0004520.4
TkA07G270330PF25173Beta-prop_WDR3_1st141214830.0007619.9
TkA07G270330PF25172Beta-prop_WDR3_2nd141214860.0008619.3
TkA07G270330PF00400WD40141214370.006317.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M086Arabidopsis thalianasp|Q9M086|DCAF1_ARATH DDB1- and CUL4-associated factor homolog 155.300%Swiss-ProtHigh

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