Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2002 bp · TkA07G261220|TK1151|cDNA
AAAAGAACGAAGTCCACATCAACGTAATTTCGCCTGCCCAGCCGATCGAACAGGGTTTAGCACCGTTGTTGCGCCTGGTTGACATCCGGAAGAAAAGCATGCTACTCTCGCCGGCGCCGCCACCACCATCGATCACTAAACCACCGATGCTTCTCCTCTCACCACCTCCAACTTTTCTGTACACCACCACTTCCGCCACCAGAATCTCAACCCCTCGTCAGCCACGGAAACCAATACCCATCCTTTTGCACTTCGCCACT...
1851 bp · TkA07G261220|TK1151|CDS
ATGCTACTCTCGCCGGCGCCGCCACCACCATCGATCACTAAACCACCGATGCTTCTCCTCTCACCACCTCCAACTTTTCTGTACACCACCACTTCCGCCACCAGAATCTCAACCCCTCGTCAGCCACGGAAACCAATACCCATCCTTTTGCACTTCGCCACTTCACGAAAACCCCTACAGAAATTACGCCCAATTGTGCCCTATTCTTCTAACGTCGCTGGTAGTACCGGTGACGGTTCCGATGGCGGCGGCGGTTTGAG...
Protein
Download Protein FASTA616 aa · TkA07G261220|TK1151|PROTEIN
MLLSPAPPPPSITKPPMLLLSPPPTFLYTTTSATRISTPRQPRKPIPILLHFATSRKPLQKLRPIVPYSSNVAGSTGDGSDGGGGLSNWWGRWSGDDDDDNNNENENEDENSHKKRLLFYALLSSLCFSFLFHSASRAYAIASGSETGSSQEEVIWEVKGGKRTKLIPDHFRDVFVAPHVTWAWWPSSSSSKSSSTLSFGNIIPNMWVQCRELFMRLMLPEGYPDSVTSDYLEYSLWRGVQGIAAQVSGVLATQSLLYAV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G261220 |
|---|---|
| TK1151 ID | TkA07G261220 |
| OH-1004 ID | LXL04_038828 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 83.000 |
| Protein coverage (%) | TK1151 33.442 / OH-1004 81.509Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G261220 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:65314034-65316748 (-) | |||||||||
| Description | Similar to RUS1: Protein root UVB sensitive 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009926 auxin polar transport Biological Process GO:0010224 response to UV-B Biological Process GO:0032502 developmental process Biological Process GO:0009536 plastid Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0016020 membrane Cellular Component GO:0031969 chloroplast membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G31190 ath:AT3G45890 ddi:DDB_G0277179 mmu:233913 rno:361654 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04884UVB_sens_prot208-440 aaPF24160UVB_sens_C377-401 aaPF24160UVB_sens_C444-459 aaPF24160UVB_sens_C490-602 aaPF13537GATase_7490-536 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G261220 | PF04884 | UVB_sens_prot | 208 | 440 | 1.9e-77 | 260.9 |
| TkA07G261220 | PF24160 | UVB_sens_C | 377 | 401 | 2e-08 | 35.5 |
| TkA07G261220 | PF24160 | UVB_sens_C | 444 | 459 | 2e-08 | 35.5 |
| TkA07G261220 | PF24160 | UVB_sens_C | 490 | 602 | 2e-08 | 35.5 |
| TkA07G261220 | PF13537 | GATase_7 | 490 | 536 | 0.079 | 13.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.