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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G261200
Reference: TK1151 Chr: Chr07 Coordinates: 65309633-65310835 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1203 bp · TkA07G261200|TK1151|cDNA

ATGGAAATCACATCAAAGTTAACTCATTCCAAAACCAATTCCTCCTCCCAGAATCGTAAAGCCCATCGTCGGCATGGTTGTGTGTGTGTCCAATCATCCACCATCCGGTTGTCACTCCACAAACCTCACCGGAAAATTCTCCAACCGGTCAAGGATCCGACAAAGGAACTGATTCTAACCACCGCCGCTACCAACACTTCCTCTGACATTCTACGGTTGTTGGACTGCCTTGGCTTTCCGGTCCCCGATGCGTTATACAT...

CDS

Download CDS FASTA

1203 bp · TkA07G261200|TK1151|CDS

ATGGAAATCACATCAAAGTTAACTCATTCCAAAACCAATTCCTCCTCCCAGAATCGTAAAGCCCATCGTCGGCATGGTTGTGTGTGTGTCCAATCATCCACCATCCGGTTGTCACTCCACAAACCTCACCGGAAAATTCTCCAACCGGTCAAGGATCCGACAAAGGAACTGATTCTAACCACCGCCGCTACCAACACTTCCTCTGACATTCTACGGTTGTTGGACTGCCTTGGCTTTCCGGTCCCCGATGCGTTATACAT...

Protein

Download Protein FASTA

400 aa · TkA07G261200|TK1151|PROTEIN

MEITSKLTHSKTNSSSQNRKAHRRHGCVCVQSSTIRLSLHKPHRKILQPVKDPTKELILTTAATNTSSDILRLLDCLGFPVPDALYISFIKECTHFRDPNEALVLYAHLTRNRRNQPRLPLLNRTLIMFVSCGCIHNAQQVFDEMSKRDLNSWAIMIAAYADSGDYEEVIKLFTNSELQYLINGSSRFPVSWILVCVLKASANTLNLELGKQIHGWLLKTGYADDIFVGSSLINLYTNNEYSHDGDLVFDHISCHNVVVW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G261200
TK1151 IDTkA07G261200
OH-1004 IDLXL04_029009
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 97.500 / OH-1004 67.241
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G261200
LocationChr07:65309633-65310835 (-)
DescriptionSimilar to PCMP-A1: Pentatricopeptide repeat-containing protein At1g31790
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31790 Pentatricopeptide repeat-containing protein At1g31790. No verified direct reference in this release
At3g09040 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial. No verified direct reference in this release
At1g15510 Regulates the RNA editing of the chloroplast transcript accD, and is essential for the early stages of chloroplast biogenesis.
AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03930.x
Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant.2010 · DOI: 10.1007/s11103-010-9616-5
A point mutation in the pentatricopeptide repeat motif of the AtECB2 protein causes delayed chloroplast development.2011 · DOI: 10.1111/j.1744-7909.2011.01030.x
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At2g34400 Pentatricopeptide repeat-containing protein At2g34400. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029009 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009451 RNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G31790
ath:AT3G24000
ath:AT4G18520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.504
Rank 1 · TkA07G261200 · TK1151
Plastid0.332
Rank 2 · TkA07G261200 · TK1151
Nucleus0.053
Rank 3 · TkA07G261200 · TK1151
Cytoplasm0.028
Rank 4 · TkA07G261200 · TK1151
Cell membrane0.006
Rank 5 · TkA07G261200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long35-150 aa
PF26719TPR_Atp25_C57-92 aa
PF23276TPR_2468-174 aa
PF01535PPR86-107 aa
PF13041PPR_286-111 aa
PF29070MSC6_N86-174 aa
PF13041PPR_2128-150 aa
PF01535PPR129-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G261200PF17177PPR_long351500.0006119.9
TkA07G261200PF26719TPR_Atp25_C57920.1512.0
TkA07G261200PF23276TPR_24681740.0003821.1
TkA07G261200PF01535PPR861072.1e-2175.3
TkA07G261200PF13041PPR_2861111.8e-2073.5
TkA07G261200PF29070MSC6_N861742.6e-0627.5
TkA07G261200PF13041PPR_21281501.8e-2073.5
TkA07G261200PF01535PPR1291492.1e-2175.3
TkA07G261200PF12854PPR_11331461.4e-0628.7
TkA07G261200PF13812PPR_31351485.9e-0523.8
TkA07G261200PF26719TPR_Atp25_C1371770.1512.0
TkA07G261200PF13812PPR_31481735.9e-0523.8
TkA07G261200PF12854PPR_11491731.4e-0628.7
TkA07G261200PF13041PPR_21511741.8e-2073.5
TkA07G261200PF01535PPR1521732.1e-2175.3
TkA07G261200PF01535PPR2302512.1e-2175.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C6R9Arabidopsis thalianasp|Q9C6R9|PPR66_ARATH Pentatricopeptide repeat-containing protein At1g3179041.100%Swiss-ProtMedium
Q9SS83Arabidopsis thalianasp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial30.800%Swiss-ProtMedium
Q9M9E2Arabidopsis thalianasp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic31.600%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333028.400%Swiss-ProtLow
O64705Arabidopsis thalianasp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g3440032.300%Swiss-ProtMedium

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