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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G166690
Reference: TK1151 Chr: Chr07 Coordinates: 42813177-42815252 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2076 bp · TkA07G166690|TK1151|cDNA

ATGGGCAGCACAATCCTGGTCCAAGCTAGAGACCCTGGTAAGCTAAGTGAGGAGTTACAAACTGCACTTGATGAACATAGACTTAATGATGCTTGGAACTTACACGAACAACACATGAACATGGAAGGTTTTCCCAGAAAATCTATCGTCAACAACCTTCTCACAACTTCTGCACAAAGTCTCCAACTTGAATGGCTCAATAATGCTTATCATTTAGTACAAAAAGCCATCGATGAACACAAACAGAATTTGCTAGAAAA...

CDS

Download CDS FASTA

2076 bp · TkA07G166690|TK1151|CDS

ATGGGCAGCACAATCCTGGTCCAAGCTAGAGACCCTGGTAAGCTAAGTGAGGAGTTACAAACTGCACTTGATGAACATAGACTTAATGATGCTTGGAACTTACACGAACAACACATGAACATGGAAGGTTTTCCCAGAAAATCTATCGTCAACAACCTTCTCACAACTTCTGCACAAAGTCTCCAACTTGAATGGCTCAATAATGCTTATCATTTAGTACAAAAAGCCATCGATGAACACAAACAGAATTTGCTAGAAAA...

Protein

Download Protein FASTA

691 aa · TkA07G166690|TK1151|PROTEIN

MGSTILVQARDPGKLSEELQTALDEHRLNDAWNLHEQHMNMEGFPRKSIVNNLLTTSAQSLQLEWLNNAYHLVQKAIDEHKQNLLEKQTLIYLSLCLSIHGLPINAAVILRKLLETQQFPPVTAWSAILAYMSQTPSGAYLAAELVLEIGFIFQDGRVDPRKKSNEDLICMKPNTTAVNIALGGCLLYGTNRKAEQLLDMIPRIGVKTDVSMLIMMAYVYERNGRIEEIKRLKRYIDEAHDLSDVQFREFYSCLLSCHLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G166690
TK1151 IDTkA07G166690
OH-1004 IDLXL04_028537
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.300
Protein coverage (%)TK1151 100.000 / OH-1004 92.627
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G166690
LocationChr07:42813177-42815252 (+)
DescriptionSimilar to At1g03100: Pentatricopeptide repeat-containing protein At1g03100, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03100 Pentatricopeptide repeat-containing protein At1g03100, mitochondrial. No verified direct reference in this release
At4g17616 Pentatricopeptide repeat-containing protein At4g17616. No verified direct reference in this release
At1g69290 Pentatricopeptide repeat-containing protein At1g69290. No verified direct reference in this release
At1g68980 Pentatricopeptide repeat-containing protein At1g68980, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028537 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G03100
ath:AT1G68980
ath:AT1G69290
ath:AT4G17616
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.825
Rank 1 · TkA07G166690 · TK1151
Plastid0.103
Rank 2 · TkA07G166690 · TK1151
Nucleus0.064
Rank 3 · TkA07G166690 · TK1151
Cytoplasm0.047
Rank 4 · TkA07G166690 · TK1151
Cell membrane0.014
Rank 5 · TkA07G166690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25245TPR_At1g6898013-135 aa
PF29070MSC6_N23-139 aa
PF13041PPR_224-36 aa
PF24760TPR_IF140_C63-83 aa
PF25062ARM_TT21_N69-120 aa
PF13041PPR_2173-210 aa
PF01535PPR182-206 aa
PF25062ARM_TT21_N184-244 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G166690PF25245TPR_At1g68980131353.7e-0834.3
TkA07G166690PF29070MSC6_N231392.5e-1144.0
TkA07G166690PF13041PPR_224361.6e-2796.0
TkA07G166690PF24760TPR_IF140_C63831.79.8
TkA07G166690PF25062ARM_TT21_N691200.01615.7
TkA07G166690PF13041PPR_21732101.6e-2796.0
TkA07G166690PF01535PPR1822069.6e-2585.8
TkA07G166690PF25062ARM_TT21_N1842440.01615.7
TkA07G166690PF13812PPR_31982233.1e-1247.1
TkA07G166690PF24760TPR_IF140_C2162741.79.8
TkA07G166690PF01535PPR2182329.6e-2585.8
TkA07G166690PF13041PPR_22202321.6e-2796.0
TkA07G166690PF25062ARM_TT21_N2212850.01615.7
TkA07G166690PF23276TPR_242282676.2e-1039.8
TkA07G166690PF13041PPR_22512771.6e-2796.0
TkA07G166690PF01535PPR2512779.6e-2585.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SA60Arabidopsis thalianasp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial62.100%Swiss-ProtHigh
B3H672Arabidopsis thalianasp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g1761625.700%Swiss-ProtLow
P0C7R4Arabidopsis thalianasp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g6929031.900%Swiss-ProtLow
Q9CAA5Arabidopsis thalianasp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980, mitochondrial27.500%Swiss-ProtLow

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