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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G155590
Reference: TK1151 Chr: Chr07 Coordinates: 39987521-39993301 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3797 bp · TkA07G155590|TK1151|cDNA

CAAAGCTTGATGGAGCAGTTTTTATGTAGAACCATTTACAGAGGCAAGAAATCAAACCATCCTCGAAGACGGGCGGTTCCCAACAAATGATTTTCTCTAAGCTCCTCAAATCCAAAAGATTCTCTACTTCTCGATCATCTTCTTCCTCTCGTCGCAACCACCAATCATTTGTGTCACTCGCTACCTTCTTGAAATGTAGTTTCAATTTATCTCTCAAACATTACAACAACTTTCTTCTTCAACTCTTCAGAACCAAAAAA...

CDS

Download CDS FASTA

3174 bp · TkA07G155590|TK1151|CDS

ATGATTTTCTCTAAGCTCCTCAAATCCAAAAGATTCTCTACTTCTCGATCATCTTCTTCCTCTCGTCGCAACCACCAATCATTTGTGTCACTCGCTACCTTCTTGAAATGTAGTTTCAATTTATCTCTCAAACATTACAACAACTTTCTTCTTCAACTCTTCAGAACCAAAAAATTTCGATTCATCACACACTTCATATCTCAACTAAACTCCAACCATATCGAAGGAGATCATATCACAAAATCAATCTTCACAAGGGC...

Protein

Download Protein FASTA

1057 aa · TkA07G155590|TK1151|PROTEIN

MIFSKLLKSKRFSTSRSSSSSRRNHQSFVSLATFLKCSFNLSLKHYNNFLLQLFRTKKFRFITHFISQLNSNHIEGDHITKSIFTRALLKQHNYEKAVEFINTQIRKTPTILQNQILDSLVQGFCLNQKDPERGFSVLRDYLKIDGILPSSFTFCALISSFSRQGKMDRAIEVLEVMTDEKFKYPFDNFVFSTVISGFINAGNPELAVGFYQNAAKSTALQMNIVTYTCLLSAYCRLKIFKEVSELLNSIKKDGLSVDVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G155590
TK1151 IDTkA07G155590
OH-1004 IDLXL04_028433
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G155590
LocationChr07:39987521-39993301 (+)
DescriptionSimilar to At5g57250: Pentatricopeptide repeat-containing protein At5g57250, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g57250 Pentatricopeptide repeat-containing protein At5g57250, mitochondrial. No verified direct reference in this release
At2g16880 Pentatricopeptide repeat-containing protein At2g16880. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028433 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0006412 translation Biological Process
GO:0008380 RNA splicing Biological Process
GO:0032544 plastid translation Biological Process
GO:0043489 RNA stabilization Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G19290
ath:AT4G31850
ath:AT5G57250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.826
Rank 1 · TkA07G155590 · TK1151
Plastid0.080
Rank 2 · TkA07G155590 · TK1151
Nucleus0.053
Rank 3 · TkA07G155590 · TK1151
Cytoplasm0.034
Rank 4 · TkA07G155590 · TK1151
Cell membrane0.011
Rank 5 · TkA07G155590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N27-208 aa
PF13041PPR_246-89 aa
PF01535PPR86-101 aa
PF13176TPR_786-109 aa
PF13428TPR_1486-109 aa
PF14559TPR_1986-109 aa
PF13041PPR_287-102 aa
PF07719TPR_287-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G155590PF29070MSC6_N272081.2e-29104.3
TkA07G155590PF13041PPR_246897.9e-125407.6
TkA07G155590PF01535PPR861011.3e-106342.4
TkA07G155590PF13176TPR_7861091.3e-0525.6
TkA07G155590PF13428TPR_14861095.2e-0524.2
TkA07G155590PF14559TPR_19861090.007117.4
TkA07G155590PF13041PPR_2871027.9e-125407.6
TkA07G155590PF07719TPR_2871010.005717.4
TkA07G155590PF00515TPR_1871000.03314.7
TkA07G155590PF13414TPR_1187990.1612.4
TkA07G155590PF14689SPOB_a881070.003417.7
TkA07G155590PF31234TPR_Psidin_N891190.004217.3
TkA07G155590PF14853Fis1_TPR_C891220.4611.4
TkA07G155590PF12921ATP131041394.1e-1349.9
TkA07G155590PF12854PPR_11191271.5e-121396.4
TkA07G155590PF17177PPR_long1191781.5e-31110.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVD3Arabidopsis thalianasp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250, mitochondrial47.600%Swiss-ProtMedium
Q9ZVX5Arabidopsis thalianasp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g1688037.800%Swiss-ProtLow

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