TkA07G148600 | RubberDandelionOmics

Gene overview

TkA07G148600

Reference: TK1151 Chr: Chr07 Coordinates: 38338269-38342594 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2279 bp · TkA07G148600|TK1151|cDNA

TGGTCGTTTGCCAAACCGTAAAATTACCGGACGCCTGTAACCCTACCCTCACTTACGAATTTCCAATTCTATCCTTTGCTTCGCTACTACTACTACTACCCGAAAGCACTCCCGGCCGCCATTTAAACCAGTTTCCAAAAACCCTAACGCCATTACAGATTCTCCACACAACTTTCTCATTCAATGGCGGACGTGGATGCTAACGTCTCAATCGGCAACTCAGCGCCTGCTCCACCGGAGTCAGAGGTTTTAAGCAAGAA...

CDS

Download CDS FASTA

1845 bp · TkA07G148600|TK1151|CDS

ATGGCGGACGTGGATGCTAACGTCTCAATCGGCAACTCAGCGCCTGCTCCACCGGAGTCAGAGGTTTTAAGCAAGAATGCTCAAAAGAAGGAGCTAAAGAACAAACAGAAGGAGGAAGAGAGGCGTCGCAAGGATGAGGAGAAGGCGAAAAAGGCTGCTGCCATGCCAAAGTCCACAGCACAGAAGCAGTCTGCTGCAGATGATGAAGACATGGATCCAACGCAATATTTTGAAAACCGCCTGAAAACACTTGCTACTCA...

Protein

Download Protein FASTA

614 aa · TkA07G148600|TK1151|PROTEIN

MADVDANVSIGNSAPAPPESEVLSKNAQKKELKNKQKEEERRRKDEEKAKKAAAMPKSTAQKQSAADDEDMDPTQYFENRLKTLATQKAAGNNPYPHKFHVSMSILEYINKYESLNNGDHLEDVQVSLAGRLMNKRSSSSKLFFYDLHGTGGKVQVMADARKSDLDEEEFTKYHSGVKRGDIVGIVGFPGKSKRGELSIFPKTFTVLSHCLHMMPRQKSAAVAENANVKKIDAWTPGSGRNPEAYILKDQETRYRQRYLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G148600`
TK1151 ID	TkA07G148600
OH-1004 ID	LXL04_028381
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G148600

Location Chr07:38338269-38342594 (+)

Description Similar to At3g11710: Lysine--tRNA ligase, cytoplasmic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g11710`	Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0586800`	Lysine--tRNA ligase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028381 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006430 lysyl-tRNA aminoacylation Biological Process

GO:0010165 response to X-ray Biological Process

GO:0015966 diadenosine tetraphosphate biosynthetic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0070371 ERK1 and ERK2 cascade Biological Process

GO:0005615 extracellular space Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G11710

dosa:Os03g0586800

mmu:85305

sly:778357

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.656

Rank 1 · TkA07G148600 · TK1151

Nucleus0.314

Rank 2 · TkA07G148600 · TK1151

Mitochondrion0.158

Rank 3 · TkA07G148600 · TK1151

Peroxisome0.040

Rank 4 · TkA07G148600 · TK1151

Cell membrane0.039

Rank 5 · TkA07G148600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15437PGBA_C22-88 aa

PF15171Spexin22-81 aa

PF27710TRM10_TRM10A22-71 aa

PF12569NatA_aux_su25-73 aa

PF01336tRNA_anti-codon126-207 aa

PF15171Spexin131-167 aa

PF00152tRNA-synt_2249-598 aa

PF01409tRNA-synt_2d342-394 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G148600	`PF15437`	PGBA_C	22	88	0.32	12.1
TkA07G148600	`PF15171`	Spexin	22	81	0.53	11.3
TkA07G148600	`PF27710`	TRM10_TRM10A	22	71	0.94	9.8
TkA07G148600	`PF12569`	NatA_aux_su	25	73	7.4	6.1
TkA07G148600	`PF01336`	tRNA_anti-codon	126	207	4.1e-12	46.6
TkA07G148600	`PF15171`	Spexin	131	167	0.53	11.3
TkA07G148600	`PF00152`	tRNA-synt_2	249	598	6.5e-93	311.9
TkA07G148600	`PF01409`	tRNA-synt_2d	342	394	2.6e-07	31.1
TkA07G148600	`PF01409`	tRNA-synt_2d	570	592	2.6e-07	31.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZPI1`	Arabidopsis thaliana	sp\|Q9ZPI1\|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic	80.700%	Swiss-Prot	High
`Q6F2U9`	Oryza sativa subsp. japonica	sp\|Q6F2U9\|SYK_ORYSJ Lysine--tRNA ligase	79.900%	Swiss-Prot	High

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