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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G134350
Reference: TK1151 Chr: Chr07 Coordinates: 34894613-34897724 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3036 bp · TkA07G134350|TK1151|cDNA

ATTATCCCTCCAGTACGATAAGTTTTCTCAAACAAACACTTCCTCACAATCTTCATAATTTCTTGCAGTTTTCAGCTTACAATTCGATCCAGCCATTGCTCTGTAATTTATATTTGGAGTTTTTTTGATTTAATTGGGCATAGAAATGACTCCGAATTGAGTTACTGAAATTCGCAGCAGCTTCTTAATGGCTTCAATAAAATGCTGTGTTCATTTAGACAGTTATGATGCGAAGAAACTTAACTCCGTTTTGCAGTTCT...

CDS

Download CDS FASTA

2772 bp · TkA07G134350|TK1151|CDS

ATGGCTTCAATAAAATGCTGTGTTCATTTAGACAGTTATGATGCGAAGAAACTTAACTCCGTTTTGCAGTTCTCAGATCGAGCTTTGATCTTTTCCTTTAATGGTGTAAATAACAACCCCTTCGGTAAGTTAAAGCAAGTTAGGGTTTCTAAGTTAGATACTGAGTTTTCAGATGTTTTACAATCGAATAATGTTGACAGACCTTTGGATTTAAGTAATGAGAATGTAGTTTCACGAAGCCCTAAATTATACGGGGAGTT...

Protein

Download Protein FASTA

923 aa · TkA07G134350|TK1151|PROTEIN

MASIKCCVHLDSYDAKKLNSVLQFSDRALIFSFNGVNNNPFGKLKQVRVSKLDTEFSDVLQSNNVDRPLDLSNENVVSRSPKLYGEFRKGKKRSIWKRLDGMRNVAKTSNVMHNSTNESEKQQEIMSDHEIGNVDVLFRNDKFYENLSSNGLESSLHHCNLILEKLENSNRDDEVLKFFKWMRISGTLKHNTNAYKLALRVLGRRQDWEEAERLIQEMQTESSCQLTFQIFNTLIFACHKRGLVTAGRKWFQMMLNKQIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G134350
TK1151 IDTkA07G134350
OH-1004 IDLXL04_028255
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 85.482 / OH-1004 85.498
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G134350
LocationChr07:34894613-34897724 (+)
DescriptionSimilar to At4g30825: Pentatricopeptide repeat-containing protein At4g30825, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30825 Pentatricopeptide repeat-containing protein At4g30825, chloroplastic. No verified direct reference in this release
At1g03540 Pentatricopeptide repeat-containing protein At1g03540. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028255 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006412 translation Biological Process
GO:0032544 plastid translation Biological Process
GO:0043489 RNA stabilization Biological Process
GO:0005675 transcription factor TFIIH holo complex Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT4G30825
ath:AT4G31850
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.520
Rank 1 · TkA07G134350 · TK1151
Plastid0.317
Rank 2 · TkA07G134350 · TK1151
Nucleus0.068
Rank 3 · TkA07G134350 · TK1151
Cytoplasm0.028
Rank 4 · TkA07G134350 · TK1151
Cell membrane0.009
Rank 5 · TkA07G134350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N12-109 aa
PF28774DUF845797-118 aa
PF17177PPR_long143-220 aa
PF13812PPR_3145-183 aa
PF23276TPR_24146-242 aa
PF29070MSC6_N155-320 aa
PF13041PPR_2159-186 aa
PF25058ARM_TT21185-221 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G134350PF29070MSC6_N121093.1e-2176.6
TkA07G134350PF28774DUF8457971180.01316.5
TkA07G134350PF17177PPR_long1432203.9e-32112.1
TkA07G134350PF13812PPR_31451835.6e-50168.0
TkA07G134350PF23276TPR_241462421e-36126.5
TkA07G134350PF29070MSC6_N1553203.1e-2176.6
TkA07G134350PF13041PPR_21591862.8e-82271.4
TkA07G134350PF25058ARM_TT211852215.5e-0627.1
TkA07G134350PF25058ARM_TT211872215.5e-0627.1
TkA07G134350PF13812PPR_31882395.6e-50168.0
TkA07G134350PF14559TPR_191902170.006917.4
TkA07G134350PF20431E_motif1902210.2212.5
TkA07G134350PF28774DUF84571912190.01316.5
TkA07G134350PF24760TPR_IF140_C1922185.08.3
TkA07G134350PF13041PPR_21932202.8e-82271.4
TkA07G134350PF13428TPR_141932183.1e-0937.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O65567Arabidopsis thalianasp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic47.100%Swiss-ProtMedium
Q9LR69Arabidopsis thalianasp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g0354024.100%Swiss-ProtLow

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