TkA07G130270 | RubberDandelionOmics

Gene overview

TkA07G130270

Reference: TK1151 Chr: Chr07 Coordinates: 33687708-33693721 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1890 bp · TkA07G130270|TK1151|cDNA

ATGCTACCAAGTGTGGCTCACCTTCCTCCAATATTTATACACATCAACACCTCAAGAAAACCATCCACCATTCATTCATCCACACACACATACTCTTAATTTCTCTCTCACACACACAACAAACGAGATAAGGGTAGAAAGAGAAAGCTTTAAAGCATATCAATGGCAGGAAGTGGTGTTTTTGAAGAGATAATAGAAGGAGATGTGTTCAAATATTACACTGATGGAGAATGGAAGAAATCTGCTTCTGGAAAATCTGT...

CDS

Download CDS FASTA

1491 bp · TkA07G130270|TK1151|CDS

ATGGCAGGAAGTGGTGTTTTTGAAGAGATAATAGAAGGAGATGTGTTCAAATATTACACTGATGGAGAATGGAAGAAATCTGCTTCTGGAAAATCTGTTGCCATTATCAACCCGACAACCAGAACCACTCAGTACAAGGTTCAAGCATGTACACAAGAAGAGGTGAACAAAGTGATGGAATCGGCTAAAATTGCTCAAAAACAGTGGGCGAAAACACCATTATGGAAGCGTGCTGAGCTTCTTCACAAGGCGGCTGCTAT...

Protein

Download Protein FASTA

496 aa · TkA07G130270|TK1151|PROTEIN

MAGSGVFEEIIEGDVFKYYTDGEWKKSASGKSVAIINPTTRTTQYKVQACTQEEVNKVMESAKIAQKQWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDSVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIAGNSLVLKPPTQGAVACLHMVQCFNLAGFPKGLISCITGKGSEIGDFLTMHPGVNCISFTGGDTGISISKKAGMVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G130270`
TK1151 ID	TkA07G130270
OH-1004 ID	LXL04_028205
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G130270

Location Chr07:33687708-33693721 (+)

Description Similar to GAPN: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24270`	Important as a means of generating NADPH for biosynthetic reactions.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028205 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity Molecular Function

GO:0008911 lactaldehyde dehydrogenase (NAD+) activity Molecular Function

KEGG gene cross-reference

ath:AT2G24270

zma:542583

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.619

Rank 1 · TkA07G130270 · TK1151

Mitochondrion0.194

Rank 2 · TkA07G130270 · TK1151

Nucleus0.180

Rank 3 · TkA07G130270 · TK1151

Peroxisome0.110

Rank 4 · TkA07G130270 · TK1151

Cell membrane0.067

Rank 5 · TkA07G130270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17309DUF535613-88 aa

PF00171Aldedh24-483 aa

PF07368DUF1487272-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G130270	`PF17309`	DUF5356	13	88	0.41	11.9
TkA07G130270	`PF00171`	Aldedh	24	483	3.9e-143	478.1
TkA07G130270	`PF07368`	DUF1487	272	326	0.063	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1WIQ6`	Arabidopsis thaliana	sp\|Q1WIQ6\|GAPN_ARATH NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	89.900%	Swiss-Prot	High

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