TkA07G129030 | RubberDandelionOmics

Gene overview

TkA07G129030

Reference: TK1151 Chr: Chr07 Coordinates: 33346716-33350301 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1422 bp · TkA07G129030|TK1151|cDNA

TCACTACCAAAGTCAAAGACAGTGTGAATGGGATATATATCGTTTACTAAAATCTCTGTATTTTCCAAGAAGAAAAGAGAAGTAAAGCACGACACTGTCACAAATGACAAGGATCTAGCACGTATATCTGGAGACCGAAGAGGAAGAGCAAGCAGCAATGGCAATGGCGATGAAGCTACGTTTCCTCCCAAACTACGAGCATCGATTTACGAGTGCACCAAACGCATGTCGCTCTTCTCCGGTGAAGTTATCGATCAAAA...

CDS

Download CDS FASTA

1077 bp · TkA07G129030|TK1151|CDS

ATGGCAATGGCGATGAAGCTACGTTTCCTCCCAAACTACGAGCATCGATTTACGAGTGCACCAAACGCATGTCGCTCTTCTCCGGTGAAGTTATCGATCAAAAACCAAGTTCAAAGTCAAAGATTACAAAAGAAGCGGAGACCGGAGAACGTTGCTGGAGAGTTCTTCGTTGATCATACATGCATTGATTGTGACACCTGTCGTTGGATGGCCCCAGAAGTATTCTCACGTGTTGATGGCATGTCTGCTGTATCAAAGCA...

Protein

Download Protein FASTA

358 aa · TkA07G129030|TK1151|PROTEIN

MAMAMKLRFLPNYEHRFTSAPNACRSSPVKLSIKNQVQSQRLQKKRRPENVAGEFFVDHTCIDCDTCRWMAPEVFSRVDGMSAVSKQPSCQDERLKALQALLSCPTSSISTEKRAHDILEVQKTFPIPINMDKIPGLYHCGYHSDKSYGAASYLIVHPQGNILIDSPRYTERLAKNIEDMGGAQYMFLTHKDDVADHKKWSDRLSCKRILHSTEVQDITEDVEMKLDGCGPWSLNDDIQLIHTPGHTEGSVCLFYKPLKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G129030`
TK1151 ID	TkA07G129030
OH-1004 ID	LXL04_028186
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 92.737 / OH-1004 71.002 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G129030`
Location	Chr07:33346716-33350301 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028186` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.910

Rank 1 · TkA07G129030 · TK1151

Mitochondrion0.100

Rank 2 · TkA07G129030 · TK1151

Cytoplasm0.060

Rank 3 · TkA07G129030 · TK1151

Nucleus0.040

Rank 4 · TkA07G129030 · TK1151

Peroxisome0.027

Rank 5 · TkA07G129030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14597Lactamase_B_546-80 aa

PF13370Fer4_1357-111 aa

PF14597Lactamase_B_5141-209 aa

PF00753Lactamase_B151-166 aa

PF19583ODP151-269 aa

PF13370Fer4_13210-229 aa

PF00753Lactamase_B238-308 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G129030	`PF14597`	Lactamase_B_5	46	80	0.00013	22.2
TkA07G129030	`PF13370`	Fer4_13	57	111	1.2e-20	74.6
TkA07G129030	`PF14597`	Lactamase_B_5	141	209	0.00013	22.2
TkA07G129030	`PF00753`	Lactamase_B	151	166	2.8e-10	41.2
TkA07G129030	`PF19583`	ODP	151	269	0.001	19.7
TkA07G129030	`PF13370`	Fer4_13	210	229	1.2e-20	74.6
TkA07G129030	`PF00753`	Lactamase_B	238	308	2.8e-10	41.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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