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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G124230
Reference: TK1151 Chr: Chr07 Coordinates: 32185382-32190820 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3892 bp · TkA07G124230|TK1151|cDNA

TATGAGAAATTTGTATTTGAAAATCCATAATTTTGTGCTTATTTTGCGTAAAGATAGTTAATAAAAAGTTATTTTGGTCGAATTCTCTTTATATAATAACACTATTTAAAATTAAAAAGAAACAATAAACTCTCAAAATGAAATCCACCACACACACCCTTGTTTTGTCCGATGACTGTTCGTTGAAGAAAGGGATTACGTAGGACTACCAAGTTGTCCATTACCACAAAACAGTCGATTACTTTTCCAAGTTCCATCGA...

CDS

Download CDS FASTA

3204 bp · TkA07G124230|TK1151|CDS

ATGGATTCTACTGCTTCCTCCAGTACAATCGTTTCTCCCGGGACAAACAATAGCAGATACGACGTTTTCATAAGTTTTAGAGGCGAAGATACTCGCTTCTCCTTTACAGATCATCTCTACGAGGCGTTAGTGGGAGCAGGAATCAGGACTTTCACGGATGATGAGTCAATCAACAGAGGTGAAGATCTGAAACCCGAAATAGAAAGAGCAATCACTGCATCAAGGGCTTCAATAGTTGTATTGTCAAAAAATTACGCAAA...

Protein

Download Protein FASTA

1067 aa · TkA07G124230|TK1151|PROTEIN

MDSTASSSTIVSPGTNNSRYDVFISFRGEDTRFSFTDHLYEALVGAGIRTFTDDESINRGEDLKPEIERAITASRASIVVLSKNYANSTWCLDELLLIMERRKTFYHIVIPVFYHVDPSDVRQQQNNFELKVNTVKWTEHKVERWKAALTEFANLDPMVLSGPETKFIADIVSTIGHKLRLKLASTPPHLTGMDTRAESINSWVKDKQDVEVLAICGMAGSGKTTMAKYIYDSNFLKFESSSFLEDIGKICEQPYGLCAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G124230
TK1151 IDTkA07G124230
OH-1004 IDLXL04_028142
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 94.019
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G124230
LocationChr07:32185382-32190820 (-)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g19510 Disease resistance protein that cooperates with RPP2A to confer resistance to Hyaloperonospora parasitica isolate Cala2. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028142 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
KEGG gene cross-reference
ath:AT4G12010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.488
Rank 1 · TkA07G124230 · TK1151
Nucleus0.326
Rank 2 · TkA07G124230 · TK1151
Cell membrane0.261
Rank 3 · TkA07G124230 · TK1151
Endoplasmic reticulum0.078
Rank 4 · TkA07G124230 · TK1151
Plastid0.051
Rank 5 · TkA07G124230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR20-185 aa
PF13676TIR_222-119 aa
PF08937ThsB_TIR29-95 aa
PF00931NB-ARC195-365 aa
PF24883NPHP3_N198-233 aa
PF01637ATPase_2199-304 aa
PF25199nSTAND_NTPase5204-226 aa
PF20720nSTAND3205-231 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G124230PF01582TIR201851.8e-44152.4
TkA07G124230PF13676TIR_2221199.3e-1968.8
TkA07G124230PF08937ThsB_TIR29950.003718.3
TkA07G124230PF00931NB-ARC1953653.9e-2176.1
TkA07G124230PF24883NPHP3_N1982332e-0628.8
TkA07G124230PF01637ATPase_21993040.07213.6
TkA07G124230PF25199nSTAND_NTPase52042260.1412.7
TkA07G124230PF20720nSTAND32052310.009316.4
TkA07G124230PF13173AAA_142113250.002118.8
TkA07G124230PF00005ABC_tran2112320.1813.1
TkA07G124230PF13401AAA_222123050.0002322.2
TkA07G124230PF05729NACHT2123080.08213.5
TkA07G124230PF13238AAA_182142770.003818.4
TkA07G124230PF00004AAA2153030.02715.6
TkA07G124230PF01443Viral_helicase12153050.1412.7
TkA07G124230PF07693KAP_NTPase2473070.4910.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JT80Arabidopsis thalianasp|F4JT80|RPP2B_ARATH Disease resistance protein RPP2B33.900%Swiss-ProtMedium

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