TkA07G095810 | RubberDandelionOmics

Gene overview

TkA07G095810

Reference: TK1151 Chr: Chr07 Coordinates: 24988193-24990308 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

978 bp · TkA07G095810|TK1151|cDNA

ATGTGGCTAACACTTATTCAGCGTGCTGATCTGTTCAGCGCGTGTTCAGCATCAGAAGATCAAGCTAAGAGCGTCAGAGTGTTGAAGTGTTGTCCGGTATTCAGCAGATCAATCTGCTCCGTGATCTTAGCATCTGCTGATACCGTAGTTAATACCTATCATGATCTTATCTTACCCAGTCATGATTTCTCCCAAAACGCCCACGTCCCGTCGTTCGAAAAGAAGAAATGGGGTGAACAGGTTTACTCTGAAAATTTCGA...

CDS

Download CDS FASTA

978 bp · TkA07G095810|TK1151|CDS

ATGTGGCTAACACTTATTCAGCGTGCTGATCTGTTCAGCGCGTGTTCAGCATCAGAAGATCAAGCTAAGAGCGTCAGAGTGTTGAAGTGTTGTCCGGTATTCAGCAGATCAATCTGCTCCGTGATCTTAGCATCTGCTGATACCGTAGTTAATACCTATCATGATCTTATCTTACCCAGTCATGATTTCTCCCAAAACGCCCACGTCCCGTCGTTCGAAAAGAAGAAATGGGGTGAACAGGTTTACTCTGAAAATTTCGA...

Protein

Download Protein FASTA

325 aa · TkA07G095810|TK1151|PROTEIN

MWLTLIQRADLFSACSASEDQAKSVRVLKCCPVFSRSICSVILASADTVVNTYHDLILPSHDFSQNAHVPSFEKKKWGEQVYSENFDIRKGNINIEWFKGGITNICYNCLDKNIELGNGDKIALHWEGNEPGVDDSLTYNQLLDKVSQLANYLKENGVRKGDSVIVYLPMLMELPITMLACARIGAVHSRQKKVINLKDIVDSALSEPSQNGVSVGLCLTYANESAMKKEATKWQKERDAWWQDVIPEYSTKCDVEWVDA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G095810`
TK1151 ID	TkA07G095810
OH-1004 ID	LXL04_013160
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	75.600
Protein coverage (%)	TK1151 83.385 / OH-1004 42.784 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G095810

Location Chr07:24988193-24990308 (-)

Description Similar to ACS: Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36880`	Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013160 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006068 ethanol catabolic process Biological Process

GO:0006083 acetate metabolic process Biological Process

GO:0006085 acetyl-CoA biosynthetic process Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0008610 lipid biosynthetic process Biological Process

GO:0019413 acetate biosynthetic process Biological Process

GO:0019427 acetyl-CoA biosynthetic process from acetate Biological Process

GO:0019542 propionate biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G36880

hsa:55902

lbl:LBL_0125

lic:LIC_13404

mmu:60525

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.254

Rank 1 · TkA07G095810 · TK1151

Peroxisome0.249

Rank 2 · TkA07G095810 · TK1151

Mitochondrion0.244

Rank 3 · TkA07G095810 · TK1151

Nucleus0.109

Rank 4 · TkA07G095810 · TK1151

Plastid0.086

Rank 5 · TkA07G095810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24133DUF740038-110 aa

PF16177ACAS_N81-109 aa

PF00501AMP-binding118-189 aa

PF00501AMP-binding205-308 aa

PF24133DUF7400215-236 aa

PF16177ACAS_N234-245 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G095810	`PF24133`	DUF7400	38	110	0.11	12.2
TkA07G095810	`PF16177`	ACAS_N	81	109	6.3e-06	26.6
TkA07G095810	`PF00501`	AMP-binding	118	189	5e-36	125.0
TkA07G095810	`PF00501`	AMP-binding	205	308	5e-36	125.0
TkA07G095810	`PF24133`	DUF7400	215	236	0.11	12.2
TkA07G095810	`PF16177`	ACAS_N	234	245	6.3e-06	26.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B9DGD6`	Arabidopsis thaliana	sp\|B9DGD6\|ACS_ARATH Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal	56.500%	Swiss-Prot	High

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