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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G094450
Reference: TK1151 Chr: Chr07 Coordinates: 24644410-24647275 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1513 bp · TkA07G094450|TK1151|cDNA

TTTGAGCAATACCCATTTTGTTTACTGTCCCCATCATTTCATTCTTCAACACAGTCGATCCCACAAAGGTGTTCCGGTAATCTGAAAGAAAGGTGTATTAAGGCCGGAAATCTGCCAGCCATAGATGATCATGTCATCGGACCGGCACGCTGCCTCTAATTCTGCCTCTCCCCAAGACAACAACCTATTTCTTGATATATCAAACGAGGCTCCTTTATCTGGACAACGTAAACGCACAGGCATCATGGGTAGCATTTTTT...

CDS

Download CDS FASTA

777 bp · TkA07G094450|TK1151|CDS

ATGGTTTACCAAGTCAAGAAAATCAGATTACAGGGTTACTATATTTTTAGTCAAAAATTGAAGCATATTATTCGTCTACCATTTGCCACTATGTCATATGGTACTTGTGCAATGTTACTGGTGATGGTTTGGGAACCCAATATAAGCATCCTTCCAATTTCCATGTTACTCAGGATTATCATGGTGGCTGAAGTTATCTTTGCTGGCTCTTTCATGAGTGTCTATATCGGTAATGTTCATCAGTACAATTCATTGGAATC...

Protein

Download Protein FASTA

258 aa · TkA07G094450|TK1151|PROTEIN

MVYQVKKIRLQGYYIFSQKLKHIIRLPFATMSYGTCAMLLVMVWEPNISILPISMLLRIIMVAEVIFAGSFMSVYIGNVHQYNSLESQPDVLKSLYSPLQPSSSLEGLSYYDGGRLSDQQMALLQYQQENLNFLSEEILRLQECLSKYERSSDGVTPQVDLAYLLAARDQELRTLSAEMNQMQSELRLARSLIGERDSEIQRVHTTNNQYVEENERLRGILGEWSSRAAKLERALEGERMSNMEFHKRTTAPKGRSPP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G094450
TK1151 IDTkA07G094450
OH-1004 IDLXL04_027794
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 76.331
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G094450
LocationChr07:24644410-24647275 (+)
DescriptionSimilar to FIP1: Protein FIP1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g06005 Protein FIP1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027794 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005770 late endosome Cellular Component
KEGG gene cross-reference
ath:AT2G06005
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.256
Rank 1 · TkA07G094450 · TK1151
Golgi apparatus0.225
Rank 2 · TkA07G094450 · TK1151
Cytoplasm0.205
Rank 3 · TkA07G094450 · TK1151
Nucleus0.198
Rank 4 · TkA07G094450 · TK1151
Mitochondrion0.147
Rank 5 · TkA07G094450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14802TMEM1925-141 aa
PF16515HIP1_clath_bdg115-159 aa
PF15619Lebercilin116-211 aa
PF18052Rx_N118-153 aa
PF27578ODF2_N122-141 aa
PF15905HMMR_N124-236 aa
PF27954CCDC192125-189 aa
PF30907IPGA1_CC127-147 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G094450PF14802TMEM19251412.1e-1040.9
TkA07G094450PF16515HIP1_clath_bdg1151594.78.4
TkA07G094450PF15619Lebercilin1162110.003517.6
TkA07G094450PF18052Rx_N1181531.89.4
TkA07G094450PF27578ODF2_N1221411.99.4
TkA07G094450PF15905HMMR_N1242360.1512.2
TkA07G094450PF27954CCDC1921251890.1412.5
TkA07G094450PF30907IPGA1_CC1271470.7310.9
TkA07G094450PF27241CLIP11372440.6110.8
TkA07G094450PF25762HAUS11552480.0004820.7
TkA07G094450PF09304Cortex-I_coil1621900.5811.1
TkA07G094450PF18052Rx_N1631941.89.4
TkA07G094450PF19220Rod_CreS1652350.01215.5
TkA07G094450PF30907IPGA1_CC1661860.7310.9
TkA07G094450PF27578ODF2_N1682261.99.4
TkA07G094450PF23649FKBP151692500.2111.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8S8K9Arabidopsis thalianasp|Q8S8K9|FRIP1_ARATH Protein FIP176.000%Swiss-ProtHigh

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