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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G091620
Reference: TK1151 Chr: Chr07 Coordinates: 23882950-23887623 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3047 bp · TkA07G091620|TK1151|cDNA

GCTTCTTGGACAATCTACAAGAGTAAAAGGGAAATTCCTCAGCTTTTTCCCTCTACCCTTTCTAAAACCCCAAGGACACGATTCTTTGGGGGAAGTTGAACTGGACGCCATTGTTGCAATAACATCGAGCTTTTGAACAATTTGTCTTAAATCTCCTTCCTGTTCGTTGCAAAAATTGTCTTAAACCCTCCCATGTACTTCCATTCCTACCGCCATTTCTTTCCATTGCAAATGTGAAGGTTCTGATTAATAAATTTAGG...

CDS

Download CDS FASTA

2583 bp · TkA07G091620|TK1151|CDS

ATGGCAGCAAAGAAGGAAGTTATAAACCCTAAAGCCATTATACACCAAAGATTTGGGGATAAAGCGCATTACAACATAGAAGAAATTCAAGAATTCTCATCGAATGGATGTCCTGGCCTTTCTATTACACAAAAAGGTCCATGCCTATACCGTTGCTGCCTGCAACTTCCAGATTTTTCCGTCGTGTCAGAGGTTTTTAAGCGAAAAAAAGATGCTATGCAATCTGCTGCAGAAAAAGCCCTAGAAAAGTTAACCGACCC...

Protein

Download Protein FASTA

860 aa · TkA07G091620|TK1151|PROTEIN

MAAKKEVINPKAIIHQRFGDKAHYNIEEIQEFSSNGCPGLSITQKGPCLYRCCLQLPDFSVVSEVFKRKKDAMQSAAEKALEKLTDPPVENPSDQLVSRLSYLFSNEFYATCHPLSGHFRAALHREGDLKGFVPISLMPIYDSKISNLCKSIKPEVELKPFEVTSLIMEASGRLPDSVFGSKEHSSLKRVTPYPPEVLQSVEISCEEETYVKAIRVPYLVNKSVDSLTIDVSSNKYYMDAIAKELGVSDASRIMLSRGIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G091620
TK1151 IDTkA07G091620
OH-1004 IDLXL04_027758
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G091620
LocationChr07:23882950-23887623 (+)
DescriptionSimilar to HEN1: Small RNA 2'-O-methyltransferase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g20910 Methyltransferase that adds a methyl group to the ribose of the last nucleotide of small RNAs (sRNAs).
HEN1 functions pleiotropically in Arabidopsis development and acts in C function in the flower.2002 · DOI: 10.1242/dev.129.5.1085
Formation of corymb-like inflorescences due to delay in bolting and flower development in the corymbosa2 mutant of Arabidopsis.2002 · DOI: 10.1093/pcp/pcf036
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.2005 · DOI: 10.1016/j.cub.2005.07.029

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001510 RNA methylation Biological Process
GO:0009616 RNAi-mediated antiviral immune response Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010093 specification of floral organ identity Biological Process
GO:0010267 ta-siRNA processing Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010589 leaf proximal/distal pattern formation Biological Process
GO:0030422 siRNA processing Biological Process
GO:0035196 miRNA processing Biological Process
GO:0035279 miRNA-mediated gene silencing by mRNA destabilization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT4G20910
hsa:113802
mcf:102140180
rno:100363095
xtr:100286818
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.606
Rank 1 · TkA07G091620 · TK1151
Cytoplasm0.405
Rank 2 · TkA07G091620 · TK1151
Mitochondrion0.068
Rank 3 · TkA07G091620 · TK1151
Cell membrane0.054
Rank 4 · TkA07G091620 · TK1151
Endoplasmic reticulum0.043
Rank 5 · TkA07G091620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24995DSRM_215-85 aa
PF03368Dicer_dimer37-85 aa
PF00035dsrm42-84 aa
PF17842dsRBD263-84 aa
PF14709DND1_DSRM67-84 aa
PF21224Hen1_LCD93-194 aa
PF18441Hen1_Lam_C211-338 aa
PF17842dsRBD2340-397 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G091620PF24995DSRM_215858.1e-1143.0
TkA07G091620PF03368Dicer_dimer37850.1712.6
TkA07G091620PF00035dsrm42843.3e-0628.3
TkA07G091620PF17842dsRBD263841.7e-43148.9
TkA07G091620PF14709DND1_DSRM67840.005817.6
TkA07G091620PF21224Hen1_LCD931949e-34116.8
TkA07G091620PF18441Hen1_Lam_C2113381.2e-48165.1
TkA07G091620PF17842dsRBD23403971.7e-43148.9
TkA07G091620PF22901dsrm_Ferlin3654040.01716.2
TkA07G091620PF00035dsrm3714073.3e-0628.3
TkA07G091620PF14709DND1_DSRM3714420.005817.6
TkA07G091620PF03368Dicer_dimer3764060.1712.6
TkA07G091620PF17842dsRBD23924461.7e-43148.9
TkA07G091620PF00254FKBP_C4034290.0001422.8
TkA07G091620PF00254FKBP_C5005590.0001422.8
TkA07G091620PF05175MTS6246820.005517.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5Q8Arabidopsis thalianasp|Q9C5Q8|HEN1_ARATH Small RNA 2'-O-methyltransferase44.700%Swiss-ProtMedium

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