TkA07G073210 | RubberDandelionOmics

Gene overview

TkA07G073210

Reference: TK1151 Chr: Chr07 Coordinates: 19194753-19195115 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

363 bp · TkA07G073210|TK1151|cDNA

ATGGCGTCGATCGATCTCCACCGTGTAAAGCGGTTGTCTGCAATGGAGGACTCTCCAAATTGGCTGGCTATGCCTGAAGAACTGATGGCAAATATACTTAAAAGACCGAGAGATGTAGAAATACTCAACAACGCGGTGAAAGTTTGCACAACATGGTGGAGAATTTGCAAGGATCCAGCGATGTGGAAGGTCATTGATATTGCTGCTTGGGATGTGGGTTACTATATTGATGATGGGGATGTTAATTACGATCTTGAGGC...

CDS

Download CDS FASTA

363 bp · TkA07G073210|TK1151|CDS

ATGGCGTCGATCGATCTCCACCGTGTAAAGCGGTTGTCTGCAATGGAGGACTCTCCAAATTGGCTGGCTATGCCTGAAGAACTGATGGCAAATATACTTAAAAGACCGAGAGATGTAGAAATACTCAACAACGCGGTGAAAGTTTGCACAACATGGTGGAGAATTTGCAAGGATCCAGCGATGTGGAAGGTCATTGATATTGCTGCTTGGGATGTGGGTTACTATATTGATGATGGGGATGTTAATTACGATCTTGAGGC...

Protein

Download Protein FASTA

120 aa · TkA07G073210|TK1151|PROTEIN

MASIDLHRVKRLSAMEDSPNWLAMPEELMANILKRPRDVEILNNAVKVCTTWWRICKDPAMWKVIDIAAWDVGYYIDDGDVNYDLEALTKHAVNLSCGELIDISLNGFGTDDLLHYIVVR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G073210`
TK1151 ID	TkA07G073210
OH-1004 ID	LXL04_027562
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 28.103 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G073210

Location Chr07:19194753-19195115 (-)

Description Similar to FBL23: Putative F-box/LRR-repeat protein 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05460`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g05500`	Putative F-box/LRR-repeat protein 23.	No verified direct reference in this release
`At4g05475`	Putative F-box protein At4g05475.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:1905761 SCF ubiquitin ligase complex binding Molecular Function

KEGG gene cross-reference

ath:AT4G05460

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.577

Rank 1 · TkA07G073210 · TK1151

Cytoplasm0.453

Rank 2 · TkA07G073210 · TK1151

Cell membrane0.072

Rank 3 · TkA07G073210 · TK1151

Endoplasmic reticulum0.064

Rank 4 · TkA07G073210 · TK1151

Plastid0.039

Rank 5 · TkA07G073210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19667DUF61709-56 aa

PF12937F-box-like21-66 aa

PF00646F-box21-63 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G073210	`PF19667`	DUF6170	9	56	0.17	12.4
TkA07G073210	`PF12937`	F-box-like	21	66	4.2e-06	27.1
TkA07G073210	`PF00646`	F-box	21	63	0.0046	17.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0U9`	Arabidopsis thaliana	sp\|Q9M0U9\|SKI19_ARATH F-box protein SKIP19	48.200%	Swiss-Prot	Medium
`Q9S9V9`	Arabidopsis thaliana	sp\|Q9S9V9\|FBL23_ARATH Putative F-box/LRR-repeat protein 23	44.500%	Swiss-Prot	Medium
`Q9M0U7`	Arabidopsis thaliana	sp\|Q9M0U7\|FB221_ARATH Putative F-box protein At4g05475	42.600%	Swiss-Prot	Medium

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