TkA07G072960 | RubberDandelionOmics

Gene overview

TkA07G072960

Reference: TK1151 Chr: Chr07 Coordinates: 19119917-19121416 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1500 bp · TkA07G072960|TK1151|cDNA

ATGGCGGCCACTTTAAAGTCAGTCAACCACCGTCATCAACCGCTCTCAGCTGCTAGCCAGAACCACGTCCGCCGCCTTGTAACTGCATCTTTCAACGAGGTTGCGATTAACGACGGTGATAAGAGATCAAATAAGTCAACTCGCCTAGCGAAATCGATCACGAACCTCTTGAATCTGTATATCGACAAGCCATCGCTGAAACACTTTCTCCAACGTCATGACTGGGATGTTGTTGCTCAGGCGGAGGCGAAGCTAGAGTT...

CDS

Download CDS FASTA

1500 bp · TkA07G072960|TK1151|CDS

ATGGCGGCCACTTTAAAGTCAGTCAACCACCGTCATCAACCGCTCTCAGCTGCTAGCCAGAACCACGTCCGCCGCCTTGTAACTGCATCTTTCAACGAGGTTGCGATTAACGACGGTGATAAGAGATCAAATAAGTCAACTCGCCTAGCGAAATCGATCACGAACCTCTTGAATCTGTATATCGACAAGCCATCGCTGAAACACTTTCTCCAACGTCATGACTGGGATGTTGTTGCTCAGGCGGAGGCGAAGCTAGAGTT...

Protein

Download Protein FASTA

499 aa · TkA07G072960|TK1151|PROTEIN

MAATLKSVNHRHQPLSAASQNHVRRLVTASFNEVAINDGDKRSNKSTRLAKSITNLLNLYIDKPSLKHFLQRHDWDVVAQAEAKLELPTMSPKEDISSIWRDIHGGSDWENLLDPLHPFVRRELIKYGEFSQATYDAFDFDSFSEYCGSCLFSRRKFFDKLGLTKHGYDVTKYIYAMSQFEIPRWLEKSYVTDTWSKDSNWMGYVAVSDDLESKRIGRRDIVVAWRGTVLPSEWYEDMQRDLEPLGHGEAKVERGFLSIY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G072960`
TK1151 ID	TkA07G072960
OH-1004 ID	LXL04_027553
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 81.138 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G072960

Location Chr07:19119917-19121416 (-)

Description Similar to At1g06800: Phospholipase A1-Igamma1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06800`	Acylhydrolase with a broad specificity.	DONGLE and DEFECTIVE IN ANTHER DEHISCENCE1 lipases are not essential for wound- and pathogen-induced jasmonate biosynthesis: redundant lipases contribute to jasmonate formation.2010 · DOI: 10.1104/pp.110.155093
`At2g30550`	Acylhydrolase with broad specificity.	No verified direct reference in this release
`At1g51440`	Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2WT95`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release
`Os01g0651100`	Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027553 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004620 glycerophospholipase activity Molecular Function

GO:0004806 triacylglycerol lipase activity Molecular Function

GO:0008970 glycerophospholipid phospholipase A1 activity Molecular Function

GO:0047714 galactolipase activity Molecular Function

KEGG gene cross-reference

ath:AT1G06800

ath:AT1G51440

ath:AT2G30550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.961

Rank 1 · TkA07G072960 · TK1151

Mitochondrion0.046

Rank 2 · TkA07G072960 · TK1151

Cytoplasm0.046

Rank 3 · TkA07G072960 · TK1151

Peroxisome0.035

Rank 4 · TkA07G072960 · TK1151

Nucleus0.024

Rank 5 · TkA07G072960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07819PGAP127-60 aa

PF12697Abhydrolase_6103-122 aa

PF26363Phospholipase-like217-242 aa

PF01764Lipase_3222-369 aa

PF12146Hydrolase_4273-315 aa

PF07819PGAP1276-315 aa

PF12697Abhydrolase_6276-345 aa

PF26363Phospholipase-like287-314 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G072960	`PF07819`	PGAP1	27	60	0.0036	17.8
TkA07G072960	`PF12697`	Abhydrolase_6	103	122	0.061	14.7
TkA07G072960	`PF26363`	Phospholipase-like	217	242	0.028	14.4
TkA07G072960	`PF01764`	Lipase_3	222	369	5.1e-33	114.6
TkA07G072960	`PF12146`	Hydrolase_4	273	315	0.051	13.6
TkA07G072960	`PF07819`	PGAP1	276	315	0.0036	17.8
TkA07G072960	`PF12697`	Abhydrolase_6	276	345	0.061	14.7
TkA07G072960	`PF26363`	Phospholipase-like	287	314	0.028	14.4
TkA07G072960	`PF12146`	Hydrolase_4	409	440	0.051	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q941F1`	Arabidopsis thaliana	sp\|Q941F1\|PLA15_ARATH Phospholipase A1-Igamma1, chloroplastic	47.300%	Swiss-Prot	Medium
`Q3EBR6`	Arabidopsis thaliana	sp\|Q3EBR6\|PLA16_ARATH Phospholipase A1-Igamma2, chloroplastic	44.900%	Swiss-Prot	Medium
`Q9C8J6`	Arabidopsis thaliana	sp\|Q9C8J6\|PLA17_ARATH Phospholipase A1-Igamma3, chloroplastic	45.000%	Swiss-Prot	Medium
`A2WT95`	Oryza sativa subsp. indica	sp\|A2WT95\|PLA1_ORYSI Phospholipase A1-II 1	40.300%	Swiss-Prot	Medium
`A2ZW16`	Oryza sativa subsp. japonica	sp\|A2ZW16\|PLA1_ORYSJ Phospholipase A1-II 1	40.300%	Swiss-Prot	Medium

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