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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G063700
Reference: TK1151 Chr: Chr07 Coordinates: 16852453-16854551 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1311 bp · TkA07G063700|TK1151|cDNA

ATGATCAGGTGTCATGGAATTGTCCTCAAACATAATTGCCTGTCATCCCTGATTTCAAGAAAATCGCTCAACACTCCGAAATGCTACTCCACTTTCCTTCTTCCACAAAATGACTGCACCACAAACAACACGACGACTATTCAAACATTCGCCGATTACGAGCGTGCCCTCGTCCAAGCATTGAAATCATCTTCTTCCCTTTCTGCACCGTTCCATTACGGCCAGCATCTCCATTGTCATATCTTCAAGGGCGGATATGA...

CDS

Download CDS FASTA

1311 bp · TkA07G063700|TK1151|CDS

ATGATCAGGTGTCATGGAATTGTCCTCAAACATAATTGCCTGTCATCCCTGATTTCAAGAAAATCGCTCAACACTCCGAAATGCTACTCCACTTTCCTTCTTCCACAAAATGACTGCACCACAAACAACACGACGACTATTCAAACATTCGCCGATTACGAGCGTGCCCTCGTCCAAGCATTGAAATCATCTTCTTCCCTTTCTGCACCGTTCCATTACGGCCAGCATCTCCATTGTCATATCTTCAAGGGCGGATATGA...

Protein

Download Protein FASTA

436 aa · TkA07G063700|TK1151|PROTEIN

MIRCHGIVLKHNCLSSLISRKSLNTPKCYSTFLLPQNDCTTNNTTTIQTFADYERALVQALKSSSSLSAPFHYGQHLHCHIFKGGYDSNIFIRNSLINFYAKSGAIHDAESIFVSGFQSDRISSNIMLAGYVNVGRLSDARHLFDKMLERNIVSWNVMLSGYQRMDQPQMALDLFHKMIASGIKPNEVTMVSMLSSVANLGSLQDGEWGHEYIINNSIPINDNLSAAIIDMYAKCGNINKALQVFNQVKNKVSTISPWNT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G063700
TK1151 IDTkA07G063700
OH-1004 IDLXL04_008696
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)61.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G063700
LocationChr07:16852453-16854551 (-)
DescriptionSimilar to PCMP-E42: Pentatricopeptide repeat-containing protein At5g19020, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19020 Pentatricopeptide repeat-containing protein At5g19020, mitochondrial. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At3g62890 Pentatricopeptide repeat-containing protein At3g62890. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008696 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G13600
ath:AT2G22070
ath:AT5G19020
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.617
Rank 1 · TkA07G063700 · TK1151
Plastid0.223
Rank 2 · TkA07G063700 · TK1151
Nucleus0.048
Rank 3 · TkA07G063700 · TK1151
Cytoplasm0.032
Rank 4 · TkA07G063700 · TK1151
Cell membrane0.005
Rank 5 · TkA07G063700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00515TPR_152-57 aa
PF18768RNPP_C88-114 aa
PF13041PPR_289-113 aa
PF13812PPR_389-113 aa
PF01535PPR94-113 aa
PF12854PPR_194-113 aa
PF10602RPN795-111 aa
PF14559TPR_1996-113 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G063700PF00515TPR_152570.06413.8
TkA07G063700PF18768RNPP_C881140.09113.0
TkA07G063700PF13041PPR_2891132.1e-37127.7
TkA07G063700PF13812PPR_3891131.9e-0938.2
TkA07G063700PF01535PPR941132.2e-40134.8
TkA07G063700PF12854PPR_1941131.4e-2176.6
TkA07G063700PF10602RPN7951110.2611.7
TkA07G063700PF14559TPR_19961132.9e-0834.6
TkA07G063700PF20431E_motif971113.5e-1143.9
TkA07G063700PF13812PPR_31161511.9e-0938.2
TkA07G063700PF12854PPR_11201471.4e-2176.6
TkA07G063700PF13041PPR_21221522.1e-37127.7
TkA07G063700PF01535PPR1231522.2e-40134.8
TkA07G063700PF29070MSC6_N1291592.3e-1350.8
TkA07G063700PF13428TPR_141291501.3e-0526.2
TkA07G063700PF07719TPR_21311510.0008620.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C8Q8Arabidopsis thalianasp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020, mitochondrial57.000%Swiss-ProtMedium
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial44.700%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631045.500%Swiss-ProtMedium
Q683I9Arabidopsis thalianasp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g6289040.600%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054042.300%Swiss-ProtMedium

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