TkA07G057060 | RubberDandelionOmics

Gene overview

TkA07G057060

Reference: TK1151 Chr: Chr07 Coordinates: 15173369-15174226 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

669 bp · TkA07G057060|TK1151|cDNA

ATGAGGAGATACAATAAAAATGCTTCATCAAATCGTAGAGGGTCTAGCTCTTCTTCGCAACAAAACGAAGAGAGCCCTCCGCAACAAGAGGGATACCGCCCAACATTCGATCCTATGCTACATCAACAACAGCAGCTGGCGTTTCAAGCATGGTGTCAAACACAACCACAGTATCAGTATATGTATCAACAACCACAGTATCCCACACCACAGTATCAAACACCGCTCCTTCAATTTCAAACACCGTCCCCTCAATTTCA...

CDS

Download CDS FASTA

669 bp · TkA07G057060|TK1151|CDS

ATGAGGAGATACAATAAAAATGCTTCATCAAATCGTAGAGGGTCTAGCTCTTCTTCGCAACAAAACGAAGAGAGCCCTCCGCAACAAGAGGGATACCGCCCAACATTCGATCCTATGCTACATCAACAACAGCAGCTGGCGTTTCAAGCATGGTGTCAAACACAACCACAGTATCAGTATATGTATCAACAACCACAGTATCCCACACCACAGTATCAAACACCGCTCCTTCAATTTCAAACACCGTCCCCTCAATTTCA...

Protein

Download Protein FASTA

222 aa · TkA07G057060|TK1151|PROTEIN

MRRYNKNASSNRRGSSSSSQQNEESPPQQEGYRPTFDPMLHQQQQLAFQAWCQTQPQYQYMYQQPQYPTPQYQTPLLQFQTPSPQFQTHSPLSHTSSPQFEPTSPFTEESTQEVLETQEETSDSEESDEEEVGCGKGKAFNGAYVNYRNQPHSGENDTDILARAEATYQQDTLRKWQFGHVWRVVKDNEKWNQLPLMDDIAKQGKRRNKLSTSQLPNSQDDL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G057060`
TK1151 ID	TkA07G057060
OH-1004 ID	LXL04_035197
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	55.000
Protein coverage (%)	TK1151 97.748 / OH-1004 25.315 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G057060`
Location	Chr07:15173369-15174226 (+)
Description	Similar to MSP1: Protein MSP1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035197` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000281 mitotic cytokinesis Biological Process GO:0001578 microtubule bundle formation Biological Process GO:0002092 positive regulation of receptor internalization Biological Process GO:0006626 protein targeting to mitochondrion Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0009653 anatomical structure morphogenesis Biological Process GO:0010458 exit from mitosis Biological Process GO:0031117 positive regulation of microtubule depolymerization Biological Process GO:0031468 nuclear membrane reassembly Biological Process GO:0032506 cytokinetic process Biological Process GO:0034214 protein hexamerization Biological Process GO:0045047 protein targeting to ER Biological Process
KEGG gene cross-reference	mmu:67979 rno:309532 sce:YGR028W xla:446560 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · TkA07G057060 · TK1151

Cytoplasm0.200

Rank 2 · TkA07G057060 · TK1151

Mitochondrion0.016

Rank 3 · TkA07G057060 · TK1151

Cell membrane0.012

Rank 4 · TkA07G057060 · TK1151

Endoplasmic reticulum0.007

Rank 5 · TkA07G057060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14303NAM-associated13-27 aa

PF14303NAM-associated87-126 aa

PF20748RecJ_C_Deinoc140-188 aa

PF14303NAM-associated174-215 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G057060	`PF14303`	NAM-associated	13	27	0.57	11.7
TkA07G057060	`PF14303`	NAM-associated	87	126	0.57	11.7
TkA07G057060	`PF20748`	RecJ_C_Deinoc	140	188	0.14	12.6
TkA07G057060	`PF14303`	NAM-associated	174	215	0.57	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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