TkA07G055960 | RubberDandelionOmics

Gene overview

TkA07G055960

Reference: TK1151 Chr: Chr07 Coordinates: 14884951-14886410 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1125 bp · TkA07G055960|TK1151|cDNA

ATGGAAATGGTGGAAAAAGTTCAAAATCAACCTAGAATCCCCGCAGAACTGATAAAGTTGCAGGAAATCGTTGAAAAGGAGGAAAATGATCGAATTAGTGTGTTGCCAGATTGTTTGCTTCTAGAAATCCTCCCTCGCTTATACTCCATAGAAGATGCCATTAGAACAGGTACACTCTCCAAGCGATGGAAACATCTTTGGACCTTGTTACCTACTCTCATTATCAAACAAAATCCCGAGAAGCACCCGTTGTCGGATTT...

CDS

Download CDS FASTA

1125 bp · TkA07G055960|TK1151|CDS

ATGGAAATGGTGGAAAAAGTTCAAAATCAACCTAGAATCCCCGCAGAACTGATAAAGTTGCAGGAAATCGTTGAAAAGGAGGAAAATGATCGAATTAGTGTGTTGCCAGATTGTTTGCTTCTAGAAATCCTCCCTCGCTTATACTCCATAGAAGATGCCATTAGAACAGGTACACTCTCCAAGCGATGGAAACATCTTTGGACCTTGTTACCTACTCTCATTATCAAACAAAATCCCGAGAAGCACCCGTTGTCGGATTT...

Protein

Download Protein FASTA

374 aa · TkA07G055960|TK1151|PROTEIN

MEMVEKVQNQPRIPAELIKLQEIVEKEENDRISVLPDCLLLEILPRLYSIEDAIRTGTLSKRWKHLWTLLPTLIIKQNPEKHPLSDFVSFIDKTLAQCRQLKLKKFYLQTSEYDCRFEFQVNKWIHYAIKCNVEELSITLWDMDTGDVHQLDQHFLTSSCFTSLKLEFCTFTPTVAISWRNLRSLFINRMKLDEDLIENILSGSPQLETLVLDSCYGFSLLNITSKSVKNLVLAGYNDTDNEYDRDFIIKINAPNILSLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G055960`
TK1151 ID	TkA07G055960
OH-1004 ID	LXL04_027402
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 93.048 / OH-1004 99.713 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G055960

Location Chr07:14884951-14886410 (-)

Description Similar to At3g28410: Putative F-box/LRR-repeat protein At3g28410

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26922`	F-box/LRR-repeat protein At3g26922.	No verified direct reference in this release
`At5g56390`	Putative FBD-associated F-box protein At5g56390.	No verified direct reference in this release
`At5g50270`	Putative FBD-associated F-box protein At5g50270.	No verified direct reference in this release
`At2g04230`	F-box/FBD/LRR-repeat protein At2g04230.	No verified direct reference in this release
`At4g00160`	F-box/FBD/LRR-repeat protein At4g00160.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027402 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT3G18150

ath:AT3G28410

ath:AT5G02700

ath:AT5G02930

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.837

Rank 1 · TkA07G055960 · TK1151

Cytoplasm0.232

Rank 2 · TkA07G055960 · TK1151

Endoplasmic reticulum0.036

Rank 3 · TkA07G055960 · TK1151

Cell membrane0.035

Rank 4 · TkA07G055960 · TK1151

Plastid0.015

Rank 5 · TkA07G055960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like32-66 aa

PF00646F-box32-70 aa

PF23622LRR_At1g61320_AtMIF147-92 aa

PF29444KH_FAR1_2nd57-104 aa

PF23622LRR_At1g61320_AtMIF1101-262 aa

PF24758LRR_At5g56370122-236 aa

PF29444KH_FAR1_2nd167-270 aa

PF07723LRR_2182-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G055960	`PF12937`	F-box-like	32	66	0.018	15.5
TkA07G055960	`PF00646`	F-box	32	70	0.1	13.3
TkA07G055960	`PF23622`	LRR_At1g61320_AtMIF1	47	92	5.5e-16	59.6
TkA07G055960	`PF29444`	KH_FAR1_2nd	57	104	0.19	12.3
TkA07G055960	`PF23622`	LRR_At1g61320_AtMIF1	101	262	5.5e-16	59.6
TkA07G055960	`PF24758`	LRR_At5g56370	122	236	3.4e-13	50.5
TkA07G055960	`PF29444`	KH_FAR1_2nd	167	270	0.19	12.3
TkA07G055960	`PF07723`	LRR_2	182	205	0.094	14.1
TkA07G055960	`PF00646`	F-box	191	202	0.1	13.3
TkA07G055960	`PF07723`	LRR_2	207	215	0.094	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LJF8`	Arabidopsis thaliana	sp\|Q9LJF8\|FBL47_ARATH F-box/LRR-repeat protein At3g26922	29.100%	Swiss-Prot	Low
`Q9FM92`	Arabidopsis thaliana	sp\|Q9FM92\|FBD22_ARATH Putative FBD-associated F-box protein At5g56390	26.800%	Swiss-Prot	Low
`Q9FGR8`	Arabidopsis thaliana	sp\|Q9FGR8\|FBD19_ARATH Putative FBD-associated F-box protein At5g50270	26.100%	Swiss-Prot	Low
`Q6NKX3`	Arabidopsis thaliana	sp\|Q6NKX3\|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230	30.400%	Swiss-Prot	Medium
`Q8LF09`	Arabidopsis thaliana	sp\|Q8LF09\|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160	27.300%	Swiss-Prot	Low

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