TkA07G047930 | RubberDandelionOmics

Gene overview

TkA07G047930

Reference: TK1151 Chr: Chr07 Coordinates: 12740797-12741535 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

561 bp · TkA07G047930|TK1151|cDNA

ATGAAACATATAGCATGGGTGGTGACACTTAACTTAGTAGTCGTGATATTTATGTTCAAGAATGTGGTCACATGCAATGCACGTGTCCTCGAGACTGCCCCGAGGCTTAGGATCCTCGCAGCCAAGTACAATGTTACATCCATTCTGGTGTTCGGTGATTCGAGTGTTGATCCTCGTAACAACAACCATCTTCCAAACACATGGCATAAAGGCAACTTCTTGCCTTATGGGAAAGACTTTGGTCGTTCCAAACCAACCGG...

CDS

Download CDS FASTA

561 bp · TkA07G047930|TK1151|CDS

ATGAAACATATAGCATGGGTGGTGACACTTAACTTAGTAGTCGTGATATTTATGTTCAAGAATGTGGTCACATGCAATGCACGTGTCCTCGAGACTGCCCCGAGGCTTAGGATCCTCGCAGCCAAGTACAATGTTACATCCATTCTGGTGTTCGGTGATTCGAGTGTTGATCCTCGTAACAACAACCATCTTCCAAACACATGGCATAAAGGCAACTTCTTGCCTTATGGGAAAGACTTTGGTCGTTCCAAACCAACCGG...

Protein

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186 aa · TkA07G047930|TK1151|PROTEIN

MKHIAWVVTLNLVVVIFMFKNVVTCNARVLETAPRLRILAAKYNVTSILVFGDSSVDPRNNNHLPNTWHKGNFLPYGKDFGRSKPTGRFTNGRLSTDYIAAALGYRKIIKAYLDRNLMEEDLLHGVSFASGGSGYDDFTANITVSNILNLRLLKPSPRNFLLFRLNLKIYITVFFFFLNGKSLLEK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G047930`
TK1151 ID	TkA07G047930
OH-1004 ID	LXL04_027307
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	76.200
Protein coverage (%)	TK1151 81.183 / OH-1004 40.108 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G047930

Location Chr07:12740797-12741535 (-)

Description Similar to At5g45950: GDSL esterase/lipase At5g45950

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45950`	GDSL esterase/lipase At5g45950.	No verified direct reference in this release
`At5g45960`	GDSL esterase/lipase At5g45960.	No verified direct reference in this release
`At2g04570`	GDSL esterase/lipase At2g04570.	No verified direct reference in this release
`UniProt: Q9FHW9`	GDSL esterase/lipase At5g42170.	No verified direct reference in this release
`At3g14820`	GDSL esterase/lipase At3g14820.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027307 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016297 fatty acyl-[ACP] hydrolase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G04570

ath:AT2G42990

ath:AT3G16370

ath:AT5G45950

ath:AT5G45960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.340

Rank 1 · TkA07G047930 · TK1151

Endoplasmic reticulum0.226

Rank 2 · TkA07G047930 · TK1151

Lysosome / Vacuole0.216

Rank 3 · TkA07G047930 · TK1151

Cytoplasm0.115

Rank 4 · TkA07G047930 · TK1151

Cell membrane0.091

Rank 5 · TkA07G047930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21976SMIM437-31 aa

PF00657Lipase_GDSL48-150 aa

PF21976SMIM43163-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G047930	`PF21976`	SMIM43	7	31	9.8	7.0
TkA07G047930	`PF00657`	Lipase_GDSL	48	150	1.4e-06	29.3
TkA07G047930	`PF21976`	SMIM43	163	178	9.8	7.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ41`	Arabidopsis thaliana	sp\|Q9FJ41\|GDL85_ARATH GDSL esterase/lipase At5g45950	63.900%	Swiss-Prot	Medium
`Q9FJ40`	Arabidopsis thaliana	sp\|Q9FJ40\|GDL86_ARATH GDSL esterase/lipase At5g45960	54.100%	Swiss-Prot	Medium
`Q9SJB4`	Arabidopsis thaliana	sp\|Q9SJB4\|GDL34_ARATH GDSL esterase/lipase At2g04570	51.000%	Swiss-Prot	Medium
`Q9FHW9`	Arabidopsis thaliana	sp\|Q9FHW9\|GDL90_ARATH GDSL esterase/lipase At5g42170	45.100%	Swiss-Prot	Medium
`Q9LH73`	Arabidopsis thaliana	sp\|Q9LH73\|GDL52_ARATH GDSL esterase/lipase At3g14820	51.000%	Swiss-Prot	Medium

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