TkA07G047730 | RubberDandelionOmics

Gene overview

TkA07G047730

Reference: TK1151 Chr: Chr07 Coordinates: 12675792-12680961 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1409 bp · TkA07G047730|TK1151|cDNA

AAATATCATACACCTAAATCTCAAAAAAGATGATTTGTGTGCAAAAACAATTATTGCTTGTAAATCCAAAAGCAAACACTCTGGGCTTGCATGCTTTTTGGATCAAACTCACCTATAAATACATTATGATGATCTTTCATAGAAATCTTGACTGAAAATGAGTACCACAATCTCTCTTCTCTGTGGTGCTATTCACCATCATCAATATTCTATCTTTAAGAAATTGTTACGCGAAGGGTATCACCGCCGTTTTTGTGTTT...

CDS

Download CDS FASTA

1065 bp · TkA07G047730|TK1151|CDS

ATGAGTACCACAATCTCTCTTCTCTGTGGTGCTATTCACCATCATCAATATTCTATCTTTAAGAAATTGTTACGCGAAGGGTATCACCGCCGTTTTTGTGTTTGGAGACTCTACGGGGACCCTGGAAACAACAACTACATTCCCACGTATTCCAGAGGGAACTTCCCTCCTTATGGCAAAGATTTCCCCAATCATGAAGCTACCGGAAGGTTCAGCAATGGCCGTCTTGTCACCGATTTTATAACTGAATTTATTGGGGT...

Protein

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354 aa · TkA07G047730|TK1151|PROTEIN

MSTTISLLCGAIHHHQYSIFKKLLREGYHRRFCVWRLYGDPGNNNYIPTYSRGNFPPYGKDFPNHEATGRFSNGRLVTDFITEFIGVKKNLPPYLDPSLTIEDLMTGVSFASAGAGFDPITSQLGRALTQPQQLDLFREYKRKLEAAIGKERTDDLVSRAGYIVSSGTNDFTFNYYGPLTVRRSEYPKIADYQKFQWNLVEQFLEDLLDEGAKKIGVVGVPPIGCLPAIITINSKKPITNRTCIANLNSLSRDINQMLKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G047730`
TK1151 ID	TkA07G047730
OH-1004 ID	LXL04_027305
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	44.500
Protein coverage (%)	TK1151 82.486 / OH-1004 98.986 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G047730

Location Chr07:12675792-12680961 (-)

Description Similar to At5g45960: GDSL esterase/lipase At5g45960

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45960`	GDSL esterase/lipase At5g45960.	No verified direct reference in this release
`At1g06990`	GDSL esterase/lipase At1g06990.	No verified direct reference in this release
`At2g40250`	GDSL esterase/lipase At2g40250.	No verified direct reference in this release
`At2g31540`	GDSL esterase/lipase At2g31540.	No verified direct reference in this release
`At2g31550`	GDSL esterase/lipase At2g31550.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027305 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0016297 fatty acyl-[ACP] hydrolase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G06990

ath:AT2G04570

ath:AT5G45960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.548

Rank 1 · TkA07G047730 · TK1151

Lysosome / Vacuole0.136

Rank 2 · TkA07G047730 · TK1151

Cytoplasm0.122

Rank 3 · TkA07G047730 · TK1151

Endoplasmic reticulum0.101

Rank 4 · TkA07G047730 · TK1151

Cell membrane0.040

Rank 5 · TkA07G047730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL65-344 aa

PF13472Lipase_GDSL_2147-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G047730	`PF00657`	Lipase_GDSL	65	344	1.8e-25	91.0
TkA07G047730	`PF13472`	Lipase_GDSL_2	147	338	0.18	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ40`	Arabidopsis thaliana	sp\|Q9FJ40\|GDL86_ARATH GDSL esterase/lipase At5g45960	48.200%	Swiss-Prot	Medium
`Q9LMJ3`	Arabidopsis thaliana	sp\|Q9LMJ3\|GDL1_ARATH GDSL esterase/lipase At1g06990	44.800%	Swiss-Prot	Medium
`Q9SIZ6`	Arabidopsis thaliana	sp\|Q9SIZ6\|GDL47_ARATH GDSL esterase/lipase At2g40250	42.700%	Swiss-Prot	Medium
`Q9SIQ3`	Arabidopsis thaliana	sp\|Q9SIQ3\|GDL43_ARATH GDSL esterase/lipase At2g31540	40.100%	Swiss-Prot	Medium
`Q9SIQ2`	Arabidopsis thaliana	sp\|Q9SIQ2\|GDL44_ARATH GDSL esterase/lipase At2g31550	40.100%	Swiss-Prot	Medium

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