TkA07G040170 | RubberDandelionOmics

Gene overview

TkA07G040170

Reference: TK1151 Chr: Chr07 Coordinates: 10721714-10722439 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

726 bp · TkA07G040170|TK1151|cDNA

ATGCTAACAACATCGGAAACTGTATCAAATGTTCGTCCGACAACTTTGAAAAGACCGCTACCATCACAACAATCAGATCCTGTGAATTGTCCACGATGTGATTCGACAAACACAAAGTTTTGTTACTACAACAACTACAACAAAACACAGCCACGCCATTTTTGTAAAGCTTGCAAGAGGCATTGGACCAAAGGTGGCACCCTTCGGAATGTTCCTGTTGGTGGTGGCCGGAAAAACAAGCGAATCAAACGCCATATCAC...

CDS

Download CDS FASTA

726 bp · TkA07G040170|TK1151|CDS

ATGCTAACAACATCGGAAACTGTATCAAATGTTCGTCCGACAACTTTGAAAAGACCGCTACCATCACAACAATCAGATCCTGTGAATTGTCCACGATGTGATTCGACAAACACAAAGTTTTGTTACTACAACAACTACAACAAAACACAGCCACGCCATTTTTGTAAAGCTTGCAAGAGGCATTGGACCAAAGGTGGCACCCTTCGGAATGTTCCTGTTGGTGGTGGCCGGAAAAACAAGCGAATCAAACGCCATATCAC...

Protein

Download Protein FASTA

241 aa · TkA07G040170|TK1151|PROTEIN

MLTTSETVSNVRPTTLKRPLPSQQSDPVNCPRCDSTNTKFCYYNNYNKTQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKRIKRHITTTTAAAVTSVDHGLGLNGGKYMYPDDKGLFFKASDSEFEQVSWDFNGGFTSTMQPPAHQNLGFSMLSSLTSMDTNPIPMIPNSFSPLLTSFKDDSNSTLTATRMMVQNSATASHPWMQVPTTSNFLEPNNYWNWNDIDSIVQADLNKPFEDPQV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G040170`
TK1151 ID	TkA07G040170
OH-1004 ID	LXL04_027220
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 92.337 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G040170

Location Chr07:10721714-10722439 (-)

Description Similar to DOF3.6: Dof zinc finger protein DOF3.6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50410`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g28310`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g60200`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At3g55370`	Transcription factor that binds specifically to a 5'-AA[AG]G- 3' consensus core sequence.	Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid.2003 · DOI: 10.1046/j.1365-313x.2003.01812.x
`At5g66940`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027220 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G28310

ath:AT3G45610

ath:AT3G55370

ath:AT5G60200

ath:AT5G66940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955

Rank 1 · TkA07G040170 · TK1151

Cytoplasm0.153

Rank 2 · TkA07G040170 · TK1151

Cell membrane0.019

Rank 3 · TkA07G040170 · TK1151

Mitochondrion0.015

Rank 4 · TkA07G040170 · TK1151

Endoplasmic reticulum0.012

Rank 5 · TkA07G040170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14369Zn_ribbon_1919-35 aa

PF23451Zn_ribbon_PaaD22-59 aa

PF02701Zn_ribbon_Dof27-80 aa

PF27208TP_021430-62 aa

PF14369Zn_ribbon_1952-63 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G040170	`PF14369`	Zn_ribbon_19	19	35	2.4	9.1
TkA07G040170	`PF23451`	Zn_ribbon_PaaD	22	59	0.031	14.7
TkA07G040170	`PF02701`	Zn_ribbon_Dof	27	80	6.4e-32	110.2
TkA07G040170	`PF27208`	TP_0214	30	62	0.011	16.1
TkA07G040170	`PF14369`	Zn_ribbon_19	52	63	2.4	9.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39088`	Arabidopsis thaliana	sp\|Q39088\|DOF34_ARATH Dof zinc finger protein DOF3.4	45.200%	Swiss-Prot	Low
`Q9FZA4`	Arabidopsis thaliana	sp\|Q9FZA4\|DOF14_ARATH Dof zinc finger protein DOF1.4	78.700%	Swiss-Prot	Low
`Q84TE9`	Arabidopsis thaliana	sp\|Q84TE9\|DOF53_ARATH Dof zinc finger protein DOF5.3	57.600%	Swiss-Prot	Low
`Q9M2U1`	Arabidopsis thaliana	sp\|Q9M2U1\|DOF36_ARATH Dof zinc finger protein DOF3.6	63.300%	Swiss-Prot	Low
`Q9FGD6`	Arabidopsis thaliana	sp\|Q9FGD6\|DOF58_ARATH Dof zinc finger protein DOF5.8	60.800%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card