TkA07G039490 | RubberDandelionOmics

Gene overview

TkA07G039490

Reference: TK1151 Chr: Chr07 Coordinates: 10466139-10467855 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1181 bp · TkA07G039490|TK1151|cDNA

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACTCACGTACACACGTACACACTTACACACTATATAAGCAAACTTCCAATTTAAAGTCGAACACTACCACGATATATAGCTTCCATATACAAGATCTGCTCTTGTTTCCTTCTCAAGAACAACCGTTATATCAATCCCACTTTACTTCTTCCAATAAATTAGGGTTTATATCCCACTCCAAAAAAGGAACGAAATGTCAATGGCGAACAATC...

CDS

Download CDS FASTA

501 bp · TkA07G039490|TK1151|CDS

ATGTCAATGGCGAACAATCAAGGATTAGGGCTTGTAAGACGTACAAGTTCATTTGGTAGAAAGAGAATATTGATTTTGAATCATATGGATTTTGATTCCATTGAAGTTGCTGCACCTCAAAAGAAGCAGTTTTTGGGAACCGAATCTTTCTTTTGTTGTGAAAGATCGTTGCTTGAAGCTCTCCCTCAAGAAATCTTGATAAAGATATTATGTGGGGTAGATCACGATGATTTGAAGACGCTTTTTCATGTATCAAAATC...

Protein

Download Protein FASTA

166 aa · TkA07G039490|TK1151|PROTEIN

MSMANNQGLGLVRRTSSFGRKRILILNHMDFDSIEVAAPQKKQFLGTESFFCCERSLLEALPQEILIKILCGVDHDDLKTLFHVSKSIRDAALIAKKSHFEYSTPKKIPAFRCSLNLEEFPSTNYDKIEAPNAPKQSRVHRLHLTRKNLAAITVSLFNSSPLAANR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G039490`
TK1151 ID	TkA07G039490
OH-1004 ID	LXL04_010144
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	62.300
Protein coverage (%)	TK1151 95.783 / OH-1004 63.713 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G039490

Location Chr07:10466139-10467855 (-)

Description Similar to At1g61340: F-box protein At1g61340

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21510`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g61340`	F-box protein At1g61340.	No verified direct reference in this release
`At4g05010`	F-box protein At4g05010.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010144 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G61340

ath:AT4G05010

ath:AT4G21510

ath:AT4G35930

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.942

Rank 1 · TkA07G039490 · TK1151

Cytoplasm0.116

Rank 2 · TkA07G039490 · TK1151

Cell membrane0.030

Rank 3 · TkA07G039490 · TK1151

Endoplasmic reticulum0.018

Rank 4 · TkA07G039490 · TK1151

Plastid0.017

Rank 5 · TkA07G039490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box24-34 aa

PF09372PRANC52-82 aa

PF15966F-box_457-91 aa

PF12937F-box-like59-92 aa

PF00646F-box59-92 aa

PF29466F-box_COS11159-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G039490	`PF00646`	F-box	24	34	0.0033	18.0
TkA07G039490	`PF09372`	PRANC	52	82	0.011	16.8
TkA07G039490	`PF15966`	F-box_4	57	91	0.25	12.0
TkA07G039490	`PF12937`	F-box-like	59	92	0.00028	21.3
TkA07G039490	`PF00646`	F-box	59	92	0.0033	18.0
TkA07G039490	`PF29466`	F-box_COS111	59	92	0.017	16.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65416`	Arabidopsis thaliana	sp\|O65416\|SKI27_ARATH F-box protein SKIP27	41.300%	Swiss-Prot	Medium
`Q8GX77`	Arabidopsis thaliana	sp\|Q8GX77\|FB316_ARATH F-box protein At1g61340	40.200%	Swiss-Prot	Medium
`Q9S9T6`	Arabidopsis thaliana	sp\|Q9S9T6\|FB220_ARATH F-box protein At4g05010	47.700%	Swiss-Prot	Medium

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