TkA07G039480 | RubberDandelionOmics

Gene overview

TkA07G039480

Reference: TK1151 Chr: Chr07 Coordinates: 10453661-10463648 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1410 bp · TkA07G039480|TK1151|cDNA

ATGACGACAGGAAGAGTTGGACAGAACGACAGGAAGCCAGTCGTCTGTTGGAGTTGTGGGGAGAGCGGTCATGTCAGAAGCCATTGCCCGAAGCTCATGGTATATCAAGGCCTGAGAGGCATGAGTTTGGCAGAAGAGAACGATGAAGACGATTATGACAGTGACGAAGGGCTTCTCCTCATGTGTGATCACCATGAGAATGTTGGTGATGAGAAGCTGCAGATGAAGACGGGTGTTCCAGGTGTTGCTTCTGGTCGTGA...

CDS

Download CDS FASTA

1410 bp · TkA07G039480|TK1151|CDS

ATGACGACAGGAAGAGTTGGACAGAACGACAGGAAGCCAGTCGTCTGTTGGAGTTGTGGGGAGAGCGGTCATGTCAGAAGCCATTGCCCGAAGCTCATGGTATATCAAGGCCTGAGAGGCATGAGTTTGGCAGAAGAGAACGATGAAGACGATTATGACAGTGACGAAGGGCTTCTCCTCATGTGTGATCACCATGAGAATGTTGGTGATGAGAAGCTGCAGATGAAGACGGGTGTTCCAGGTGTTGCTTCTGGTCGTGA...

Protein

Download Protein FASTA

469 aa · TkA07G039480|TK1151|PROTEIN

MTTGRVGQNDRKPVVCWSCGESGHVRSHCPKLMVYQGLRGMSLAEENDEDDYDSDEGLLLMCDHHENVGDEKLQMKTGVPGVASGREAHTDEKVGKMRKLKQVIAKGSVSDLKTENGSSKPCIPGKQKIVSFEGVDSPPKVGELGSKCSGVYDSTFSSSVGGSQIHRNPIASIGRCSGSRSSGRPQKSGSSGKSEVSGSSRTNGDDGLVADVATVRHNMVRRHTKTNSSEMYSPSTSNTLICENVSSPALRVNSMQWEKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G039480`
TK1151 ID	TkA07G039480
OH-1004 ID	LXL04_028792
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.300
Protein coverage (%)	TK1151 99.574 / OH-1004 23.246 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G039480`
Location	Chr07:10453661-10463648 (+)
Description	Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028792` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.656

Rank 1 · TkA07G039480 · TK1151

Cytoplasm0.289

Rank 2 · TkA07G039480 · TK1151

Cell membrane0.051

Rank 3 · TkA07G039480 · TK1151

Mitochondrion0.049

Rank 4 · TkA07G039480 · TK1151

Endoplasmic reticulum0.026

Rank 5 · TkA07G039480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14392zf-CCHC_414-31 aa

PF00098zf-CCHC15-31 aa

PF16588zf-C2H2_1019-31 aa

PF18979DUF5715349-389 aa

PF07727RVT_2359-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G039480	`PF14392`	zf-CCHC_4	14	31	0.16	12.4
TkA07G039480	`PF00098`	zf-CCHC	15	31	0.0012	19.6
TkA07G039480	`PF16588`	zf-C2H2_10	19	31	0.046	14.2
TkA07G039480	`PF18979`	DUF5715	349	389	0.079	13.4
TkA07G039480	`PF07727`	RVT_2	359	426	0.00041	20.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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