TkA07G034900 | RubberDandelionOmics

Gene overview

TkA07G034900

Reference: TK1151 Chr: Chr07 Coordinates: 9303639-9308531 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1356 bp · TkA07G034900|TK1151|cDNA

ATGGATAGCCTAAAGTCCGGTGATCTGGAGTTGCCGGCGATTGAGATGGATCGCCTAATGTCCGGTGACCTGCAAAGAAAGTTCAAGAATCCAATCTCATCATATCTCATCTCTACAATGACACCCGTAAAATCGTCACTATTTCTGATCATCATCGTCGTCGTAAACTTGCTCACCCTGTCAGTCTCTCAAGAACTTACGTTCCCCTCATGTGATCAAACCGCAAATTTCACCACAAACAGCGCGTACCAAAGAAACCT...

CDS

Download CDS FASTA

1356 bp · TkA07G034900|TK1151|CDS

ATGGATAGCCTAAAGTCCGGTGATCTGGAGTTGCCGGCGATTGAGATGGATCGCCTAATGTCCGGTGACCTGCAAAGAAAGTTCAAGAATCCAATCTCATCATATCTCATCTCTACAATGACACCCGTAAAATCGTCACTATTTCTGATCATCATCGTCGTCGTAAACTTGCTCACCCTGTCAGTCTCTCAAGAACTTACGTTCCCCTCATGTGATCAAACCGCAAATTTCACCACAAACAGCGCGTACCAAAGAAACCT...

Protein

Download Protein FASTA

451 aa · TkA07G034900|TK1151|PROTEIN

MDSLKSGDLELPAIEMDRLMSGDLQRKFKNPISSYLISTMTPVKSSLFLIIIVVVNLLTLSVSQELTFPSCDQTANFTTNSAYQRNLAEALSSLTSDTNITYGFYTRSVGQTPDQVNAMAMCRGDVDPDACRSCISNARTRLREICPNQRGAIGWYDTCMIRYSNSTIFGTVDTTGGGFMWNPNNASNIEQFNQALLQLLDGLRTEASSGGSLRKYASNNVNGTRLSSIHGFMQCTPDLSEVQCYNCLDRAIQEIPNCCD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G034900`
TK1151 ID	TkA07G034900
OH-1004 ID	LXL04_027138
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	54.800
Protein coverage (%)	TK1151 85.144 / OH-1004 98.836 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G034900

Location Chr07:9303639-9308531 (+)

Description Similar to CRK10: Cysteine-rich receptor-like protein kinase 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22060`	Cysteine-rich repeat secretory protein 38.	No verified direct reference in this release
`At4g23280`	Putative cysteine-rich receptor-like protein kinase 20.	No verified direct reference in this release
`At4g20645`	Cysteine-rich repeat secretory protein 42.	No verified direct reference in this release
`At4g20640`	Cysteine-rich repeat secretory protein 43.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027138 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G21410

ath:AT4G23180

ath:AT4G23230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.784

Rank 1 · TkA07G034900 · TK1151

Endoplasmic reticulum0.097

Rank 2 · TkA07G034900 · TK1151

Cytoplasm0.083

Rank 3 · TkA07G034900 · TK1151

Extracellular0.055

Rank 4 · TkA07G034900 · TK1151

Nucleus0.052

Rank 5 · TkA07G034900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657Stress-antifung71-165 aa

PF01657Stress-antifung185-268 aa

PF18921Cyanophycin_syn186-229 aa

PF29524YLL032C_N282-385 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G034900	`PF01657`	Stress-antifung	71	165	2.4e-38	131.5
TkA07G034900	`PF01657`	Stress-antifung	185	268	2.4e-38	131.5
TkA07G034900	`PF18921`	Cyanophycin_syn	186	229	0.25	12.1
TkA07G034900	`PF29524`	YLL032C_N	282	385	0.097	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LRJ9`	Arabidopsis thaliana	sp\|Q9LRJ9\|CRR38_ARATH Cysteine-rich repeat secretory protein 38	38.600%	Swiss-Prot	Low
`O65479`	Arabidopsis thaliana	sp\|O65479\|CRK20_ARATH Putative cysteine-rich receptor-like protein kinase 20	37.100%	Swiss-Prot	Low
`P0CJ49`	Arabidopsis thaliana	sp\|P0CJ49\|CRR42_ARATH Cysteine-rich repeat secretory protein 42	38.900%	Swiss-Prot	Low
`P0CJ50`	Arabidopsis thaliana	sp\|P0CJ50\|CRR43_ARATH Cysteine-rich repeat secretory protein 43	38.900%	Swiss-Prot	Low

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