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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G034810
Reference: TK1151 Chr: Chr07 Coordinates: 9289120-9291361 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1201 bp · TkA07G034810|TK1151|cDNA

AACCGATAACCCGACTTTTGCTAATATTCAAGAACGCTTCTATACGCAATCAGATCCATCTTTCTGGTTTGTATAATCAATGGCTATTCATATCAGGCGATTAAACACTGTCATAAACTCCTCAAAATCCATCTTCAACCCCATTTCCTGGAAGTCATACATTCATGTATCGGAAGCTTCGTTATCCGACAAGTTCATCTCAACTTTTACCAGCTGCCGTGATTTTTCTGCTTGCTCTGCCGGCGTAACCGGACACATAA...

CDS

Download CDS FASTA

906 bp · TkA07G034810|TK1151|CDS

ATGGCTATTCATATCAGGCGATTAAACACTGTCATAAACTCCTCAAAATCCATCTTCAACCCCATTTCCTGGAAGTCATACATTCATGTATCGGAAGCTTCGTTATCCGACAAGTTCATCTCAACTTTTACCAGCTGCCGTGATTTTTCTGCTTGCTCTGCCGGCGTAACCGGACACATAACCTCCGAAGATGCTTTTAAAACAAATGAGCATGAATTTTTAAAATGGCACAAAGGAGGAGGGATGTTTCACACATCAGC...

Protein

Download Protein FASTA

301 aa · TkA07G034810|TK1151|PROTEIN

MAIHIRRLNTVINSSKSIFNPISWKSYIHVSEASLSDKFISTFTSCRDFSACSAGVTGHITSEDAFKTNEHEFLKWHKGGGMFHTSATIDPTAVIDFGALVHSGSLVGGNVHVGSGSIIGPNVTIGQSTKIGYNVAVSNCAIGDSCVIHHGVCIGQDGFGFFLDDKGAMVKKPQTLKALIGNNVEIGANSCIDRGSWRDTVIGDDSKIDNLVQIGHNVVIGKCCMLCGQVGIAGSVTIGDYVTLGGRVGVRDHVTIVSKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G034810
TK1151 IDTkA07G034810
OH-1004 IDLXL04_029781
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)70.900
Protein coverage (%)TK1151 25.249 / OH-1004 41.146
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G034810
LocationChr07:9289120-9291361 (-)
DescriptionSimilar to CIT: Citrate synthase, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21220 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. No verified direct reference in this release
At4g05210 Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029781 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005975 carbohydrate metabolic process Biological Process
GO:0006099 tricarboxylic acid cycle Biological Process
GO:0006101 citrate metabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005829 cytosol Cellular Component
GO:0036440 citrate synthase activity Molecular Function
KEGG gene cross-reference
ath:AT3G60100
sot:102595372
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.875
Rank 1 · TkA07G034810 · TK1151
Cytoplasm0.079
Rank 2 · TkA07G034810 · TK1151
Nucleus0.054
Rank 3 · TkA07G034810 · TK1151
Plastid0.035
Rank 4 · TkA07G034810 · TK1151
Cell membrane0.013
Rank 5 · TkA07G034810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07959Fucose_pyrophosphorylase85-148 aa
PF25087GMPPB_C86-116 aa
PF25084LbH_EIF2B88-115 aa
PF21711DCTN592-138 aa
PF00132Hexapep93-126 aa
PF24894Hexapep_GlmU97-157 aa
PF25087GMPPB_C106-154 aa
PF25084LbH_EIF2B109-196 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G034810PF07959Fucose_pyrophosphorylase851480.4110.2
TkA07G034810PF25087GMPPB_C861164.8e-1452.8
TkA07G034810PF25084LbH_EIF2B881153.2e-1350.3
TkA07G034810PF21711DCTN5921382.48.5
TkA07G034810PF00132Hexapep931261.8e-2278.7
TkA07G034810PF24894Hexapep_GlmU971571.6e-0525.6
TkA07G034810PF25087GMPPB_C1061544.8e-1452.8
TkA07G034810PF25084LbH_EIF2B1091963.2e-1350.3
TkA07G034810PF25247LbH_GLGC1211512.88.6
TkA07G034810PF00132Hexapep1221551.8e-2278.7
TkA07G034810PF14602Hexapep_21231530.0003421.0
TkA07G034810PF21711DCTN51541542.48.5
TkA07G034810PF24894Hexapep_GlmU1702221.6e-0525.6
TkA07G034810PF25084LbH_EIF2B1762433.2e-1350.3
TkA07G034810PF25087GMPPB_C1771954.8e-1452.8
TkA07G034810PF00132Hexapep1801921.8e-2278.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JIP6Arabidopsis thalianasp|F4JIP6|LPXD2_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial56.400%Swiss-ProtHigh
F4JGP6Arabidopsis thalianasp|F4JGP6|LPXD1_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial55.600%Swiss-ProtHigh

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