TkA07G033550 | RubberDandelionOmics

Gene overview

TkA07G033550

Reference: TK1151 Chr: Chr07 Coordinates: 8941284-8943039 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1414 bp · TkA07G033550|TK1151|cDNA

AGAAGACATGACTAAAAAGAAAAAGACTATTTATTGGCATGTTTGGGAAGCTTATTAGCAGCTGCAAATGAGATAGGATGGCTTTAAGCTTCACTGACGATGACTCACTATTCAAGTTCGTTGTGACAGACGGTAATGGTGTCAAAGGTCTGGTAGACTCCGGCATCATGGAGGTCCCTGGTCGCTACATCCAACCACCTCACGAGCGAATACCCAAACAACAATTACCAGTTGAATCACCTGAAAACATGACCATCGAT...

CDS

Download CDS FASTA

1092 bp · TkA07G033550|TK1151|CDS

ATGGCTTTAAGCTTCACTGACGATGACTCACTATTCAAGTTCGTTGTGACAGACGGTAATGGTGTCAAAGGTCTGGTAGACTCCGGCATCATGGAGGTCCCTGGTCGCTACATCCAACCACCTCACGAGCGAATACCCAAACAACAATTACCAGTTGAATCACCTGAAAACATGACCATCGATCTATCGGAGCTCGATGGTCCTAACCATGATCAAGTGGTTAAGGCCATAGCCCATGCGGCTGAAACTTTAGGCTTCTT...

Protein

Download Protein FASTA

363 aa · TkA07G033550|TK1151|PROTEIN

MALSFTDDDSLFKFVVTDGNGVKGLVDSGIMEVPGRYIQPPHERIPKQQLPVESPENMTIDLSELDGPNHDQVVKAIAHAAETLGFFQVVNHGVPLELLDSLKVAANKFFNQPVQKKVVYLKGASPSPNVVYTTSFAPKLEKVLEWKDIISMNYTNDADALEFWPNECKEAALDYIKTSKEIVKRLFGALMDKLDVKLEDSRIDALLGTRMVNMNFYPPCPNPDLTVGVGRHSDVTTLTILLQDDIGGLYVKKYENLSPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G033550`
TK1151 ID	TkA07G033550
OH-1004 ID	LXL04_027107
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G033550

Location Chr07:8941284-8943039 (+)

Description Similar to S8H: Scopoletin 8-hydroxylase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12900`	Involved in the pathway of sideretin biosynthesis from feruloyl CoA, a redox-active catecholic metabolite exuded by roots in response to iron deficiency in order to facilitate the uptake of iron; this pathway consists in the successive conversion from feruloyl CoA to scopoletin, from scopoletin to fraxetin and from fraxetin to sideretin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027107 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0009620 response to fungus Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009805 coumarin biosynthetic process Biological Process

GO:0010039 response to iron ion Biological Process

GO:0010447 response to acidic pH Biological Process

GO:0106147 fraxetin biosynthesis Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051213 dioxygenase activity Molecular Function

GO:0102312 4-coumaroyl 2'-hydroxylase activity Molecular Function

KEGG gene cross-reference

ag:BAL22347

ath:AT3G12900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.830

Rank 1 · TkA07G033550 · TK1151

Nucleus0.305

Rank 2 · TkA07G033550 · TK1151

Endoplasmic reticulum0.052

Rank 3 · TkA07G033550 · TK1151

Peroxisome0.048

Rank 4 · TkA07G033550 · TK1151

Mitochondrion0.045

Rank 5 · TkA07G033550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226DIOX_N59-166 aa

PF031712OG-FeII_Oxy155-167 aa

PF031712OG-FeII_Oxy211-314 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G033550	`PF14226`	DIOX_N	59	166	8.7e-24	85.2
TkA07G033550	`PF03171`	2OG-FeII_Oxy	155	167	2.7e-32	111.8
TkA07G033550	`PF03171`	2OG-FeII_Oxy	211	314	2.7e-32	111.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LE86`	Arabidopsis thaliana	sp\|Q9LE86\|S8H_ARATH Scopoletin 8-hydroxylase	59.100%	Swiss-Prot	High

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