Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1698 bp · TkA07G026930|TK1151|cDNA
AGAGACCCCTCTCAGGCTCTCATGTAAAGCTGTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTCATATACACACAAAAGACGCGTACCTCCATATTCTTCTATACATATCTTTACAAACAGTAAGTTGAGTAAAAAAAAATTGCAGAGAGAGAGAGAGAAATGGAGGGAGATGGTGGAGGAGGGAGTTCATCATGTTTGATGAGTTTTGGAGACAACAACATCATTAGTAGCAGCAGCAATAGTAATAA...
1119 bp · TkA07G026930|TK1151|CDS
ATGGAGGGAGATGGTGGAGGAGGGAGTTCATCATGTTTGATGAGTTTTGGAGACAACAACATCATTAGTAGCAGCAGCAATAGTAATAATACCAACGTTGGAGCACTGTGTCTTCCTCCGCCTCCTGTTGCATATAACACCAACACCAACAACAATAACCTAGTTTTCACCTCTCAAGATCACCATCATCACCATAGTACCTGCGGCACTTCCAATTCTGCCATGATGCTTGAAAACAACACCATTAATGGCGGAGGGCT...
Protein
Download Protein FASTA372 aa · TkA07G026930|TK1151|PROTEIN
MEGDGGGGSSSCLMSFGDNNIISSSSNSNNTNVGALCLPPPPVAYNTNTNNNNLVFTSQDHHHHHSTCGTSNSAMMLENNTINGGGLTFMTSSSCSSSLKAKIMSHPHYPRLLSAYLNCQKIGAPPEVVERLEEACRASVVQAAMSSRSGSAGCETGTSDGGGGGGGGGMNMMIIGQDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLSRVESQFKAISISTSDSGGMDKNGSSEEELDVNNNLVDPQAEDQELKGQL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G026930 |
|---|---|
| TK1151 ID | TkA07G026930 |
| OH-1004 ID | LXL04_027033 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 98.600 |
| Protein coverage (%) | TK1151 76.613 / OH-1004 76.862Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G026930 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:7262359-7265677 (+) | |||||||||
| Description | Similar to STM: Homeobox protein SHOOT MERISTEMLESS | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001708 cell fate specification Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0009691 cytokinin biosynthetic process Biological Process GO:0009888 tissue development Biological Process GO:0009934 regulation of meristem structural organization Biological Process GO:0010051 xylem and phloem pattern formation Biological Process GO:0010089 xylem development Biological Process GO:0010497 plasmodesmata-mediated intercellular transport Biological Process GO:0010582 floral meristem determinacy Biological Process GO:0019827 stem cell population maintenance Biological Process GO:0045165 cell fate commitment Biological Process GO:0048440 carpel development Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G62360 ath:AT4G08150 dosa:Os07g0129700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03790KNOX199-138 aaPF15943YdaS_toxin115-142 aaPF13565HTH_32125-136 aaPF03791KNOX2175-220 aaPF03789ELK255-276 aaPF00046Homeodomain270-292 aaPF13565HTH_32270-324 aaPF05920Homeobox_KN295-334 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G026930 | PF03790 | KNOX1 | 99 | 138 | 1.4e-22 | 79.9 |
| TkA07G026930 | PF15943 | YdaS_toxin | 115 | 142 | 0.07 | 13.7 |
| TkA07G026930 | PF13565 | HTH_32 | 125 | 136 | 0.078 | 14.3 |
| TkA07G026930 | PF03791 | KNOX2 | 175 | 220 | 1.9e-21 | 76.1 |
| TkA07G026930 | PF03789 | ELK | 255 | 276 | 2.5e-11 | 43.9 |
| TkA07G026930 | PF00046 | Homeodomain | 270 | 292 | 6.1e-07 | 29.9 |
| TkA07G026930 | PF13565 | HTH_32 | 270 | 324 | 0.078 | 14.3 |
| TkA07G026930 | PF05920 | Homeobox_KN | 295 | 334 | 4.1e-19 | 68.9 |
| TkA07G026930 | PF00046 | Homeodomain | 302 | 335 | 6.1e-07 | 29.9 |
| TkA07G026930 | PF23739 | HTH_72 | 312 | 342 | 0.039 | 14.6 |
| TkA07G026930 | PF15943 | YdaS_toxin | 312 | 331 | 0.07 | 13.7 |
| TkA07G026930 | PF05920 | Homeobox_KN | 361 | 367 | 4.1e-19 | 68.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.