TkA07G025660 | RubberDandelionOmics

Gene overview

TkA07G025660

Reference: TK1151 Chr: Chr07 Coordinates: 6853769-6855597 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1058 bp · TkA07G025660|TK1151|cDNA

GTTTCAAGTAAAATTGAAAAAACACCTTGCCGGCTTAAAGAACCAATAAACGTTACTATAAAACCAAGCATCTAACTACCAAGAAAGCAAACAACCATCAACAACAAATGGAGAAATCGAAGATCGGGAGAAGATTTGAAGGGAAAGTCGCCATCGTTACAGCTTCAACTCAGGGAATAGGTTTCAGTATTGCTCAACGACTCGGCCTTGAAGGGGCTTCTGTCGTCATCTCCTCTCGCAGACAGAAAAACGTTGATGAG...

CDS

Download CDS FASTA

768 bp · TkA07G025660|TK1151|CDS

ATGGAGAAATCGAAGATCGGGAGAAGATTTGAAGGGAAAGTCGCCATCGTTACAGCTTCAACTCAGGGAATAGGTTTCAGTATTGCTCAACGACTCGGCCTTGAAGGGGCTTCTGTCGTCATCTCCTCTCGCAGACAGAAAAACGTTGATGAGGCAGTAAATAGGCTCAAAGCACAAGGAATTGAAGCCCTAGGATTGGTATGCCATGTTTCCAATGAACAACAAAGAAAAAATCTCATTCAACAGACGGTTCAGAAATA...

Protein

Download Protein FASTA

255 aa · TkA07G025660|TK1151|PROTEIN

MEKSKIGRRFEGKVAIVTASTQGIGFSIAQRLGLEGASVVISSRRQKNVDEAVNRLKAQGIEALGLVCHVSNEQQRKNLIQQTVQKYGKIDVIVSNAAANPSVDAILDTQESTLDKLWEINVKTSILLLQDAAPHLTKNSSIVFISSISAFQPPSSMAMYGVTKTALLGLTKALASEMAPHTRVNCVAPGTVPTHFASFITDNDFIKDAIMEKTPLKRLGTVEDMAAATAFLASDDAAYITGETIVVAGGMSSRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G025660`
TK1151 ID	TkA07G025660
OH-1004 ID	LXL04_027020
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G025660

Location Chr07:6853769-6855597 (+)

Description Similar to Tropinone reductase-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05530`	Involved with IBR3 and IBR10 in the peroxisomal beta- oxidation of indole-3-butyric acid (IBA) to form indole-3-acetic acid (IAA), a biologically active auxin.	Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins.2009 · DOI: 10.1007/s11103-008-9431-4 Conversion of endogenous indole-3-butyric acid to indole-3-acetic acid drives cell expansion in Arabidopsis seedlings.2010 · DOI: 10.1104/pp.110.157461

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027020 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001523 retinoid metabolic process Biological Process

GO:0006066 alcohol metabolic process Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0008202 steroid metabolic process Biological Process

GO:0042180 ketone metabolic process Biological Process

GO:0042574 retinal metabolic process Biological Process

GO:0048767 root hair elongation Biological Process

GO:0080024 indolebutyric acid metabolic process Biological Process

GO:0080026 response to indolebutyric acid Biological Process

GO:2000379 positive regulation of reactive oxygen species metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT4G05530

hsa:10901

pon:100172190

ssc:397082

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.441

Rank 1 · TkA07G025660 · TK1151

Peroxisome0.279

Rank 2 · TkA07G025660 · TK1151

Mitochondrion0.232

Rank 3 · TkA07G025660 · TK1151

Nucleus0.153

Rank 4 · TkA07G025660 · TK1151

Plastid0.075

Rank 5 · TkA07G025660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106adh_short13-200 aa

PF027373HCDH_N14-98 aa

PF23441SDR16-251 aa

PF08659KR16-185 aa

PF13561adh_short_C219-252 aa

PF00331Glyco_hydro_1045-94 aa

PF027373HCDH_N181-234 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G025660	`PF00106`	adh_short	13	200	1.3e-43	149.4
TkA07G025660	`PF02737`	3HCDH_N	14	98	0.0036	17.9
TkA07G025660	`PF23441`	SDR	16	251	9e-14	52.2
TkA07G025660	`PF08659`	KR	16	185	4.9e-11	43.6
TkA07G025660	`PF13561`	adh_short_C2	19	252	1.1e-60	205.9
TkA07G025660	`PF00331`	Glyco_hydro_10	45	94	0.015	15.3
TkA07G025660	`PF02737`	3HCDH_N	181	234	0.0036	17.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S9W2`	Arabidopsis thaliana	sp\|Q9S9W2\|SDRA_ARATH Short-chain dehydrogenase/reductase SDRA	72.900%	Swiss-Prot	High

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