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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G023670
Reference: TK1151 Chr: Chr07 Coordinates: 6409616-6411586 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1874 bp · TkA07G023670|TK1151|cDNA

CAAAAAGTGTGTTTTTTGTGAGGCGTAAACTCCAAAGCCTTGCTTAGCTGGCAGTTGTTCTATGCCAGTGACCAAAACCCAACCACAAAAACCCCTTTCATGCTTCCATTTCTCCAAATCCTTCCAACCATGAAACTGAAATCAATATCCTTTTGAATTCACAAATTCAGAATCTCTCAAAGCAAGCTTCAATGGTGTCTTTAGAAGAAACTCATCGTTCTAGGTCCTCCATAGCTCGACCTTACCCTTACTACACCCCA...

CDS

Download CDS FASTA

1419 bp · TkA07G023670|TK1151|CDS

ATGGTGTCTTTAGAAGAAACTCATCGTTCTAGGTCCTCCATAGCTCGACCTTACCCTTACTACACCCCACCTTCATCTTCTTCTTCACCTTCCAGAAGCAAGCATATGGGTCGCTCCATGAGAACGATTCGTTCAAACTTTTACCAGTCCGATTACAGCAACGCGTGTTCCTTCACATCCACTGATGTCCCTGTAAACGATGAAAACTTAAGCGATTCTGTCATTGATGTTCGTTTGCAGGAGCTTGCTACAGCTACGTG...

Protein

Download Protein FASTA

472 aa · TkA07G023670|TK1151|PROTEIN

MVSLEETHRSRSSIARPYPYYTPPSSSSSPSRSKHMGRSMRTIRSNFYQSDYSNACSFTSTDVPVNDENLSDSVIDVRLQELATATCGSNRKSLNSASSTMSSDDFLEISQAFSDFSAYSSDISGELQRLACFPEELKEGDSDKNREEKSELEPCEGFLQRESFSTEIIEIISPEDLQPTVKICVDSLRSSSVAMKRSAAAKLRLLAKNRSDNRALIGESGAIPELITLLRCTDPWTQEHAVTAILNLSLLDANKPLIAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G023670
TK1151 IDTkA07G023670
OH-1004 IDLXL04_026998
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G023670
LocationChr07:6409616-6411586 (-)
DescriptionSimilar to PUB4: U-box domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g67340 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54790 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54850 Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes.
Structure and biochemical function of a prototypical Arabidopsis U-box domain.2004 · DOI: 10.1074/jbc.m405057200

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0102700 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
UniProt: A2ZLU6 Defense related protein that negatively regulates programmed cell death. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:1904821 chloroplast disassembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G23140
ath:AT3G54790
ath:AT5G67340
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.486
Rank 1 · TkA07G023670 · TK1151
Nucleus0.383
Rank 2 · TkA07G023670 · TK1151
Cell membrane0.230
Rank 3 · TkA07G023670 · TK1151
Endoplasmic reticulum0.050
Rank 4 · TkA07G023670 · TK1151
Golgi apparatus0.037
Rank 5 · TkA07G023670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01602Adaptin_N172-335 aa
PF30196WRM1_C175-239 aa
PF00514Arm181-201 aa
PF28415SIL1_FES1_HPBP1_C181-237 aa
PF24768ARM_ARMC5182-312 aa
PF25598ARM_PUB196-465 aa
PF25571TPR_CCP1_N204-230 aa
PF00514Arm211-249 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G023670PF01602Adaptin_N1723350.02913.6
TkA07G023670PF30196WRM1_C1752390.0008819.0
TkA07G023670PF00514Arm1812011.1e-2589.4
TkA07G023670PF28415SIL1_FES1_HPBP1_C1812370.00218.3
TkA07G023670PF24768ARM_ARMC51823121.7e-1971.0
TkA07G023670PF25598ARM_PUB1964654.6e-2486.1
TkA07G023670PF25571TPR_CCP1_N2042300.0001621.6
TkA07G023670PF00514Arm2112491.1e-2589.4
TkA07G023670PF30699ARM_GAC_22144400.0004819.3
TkA07G023670PF13646HEAT_22162560.09413.7
TkA07G023670PF26524ARM_72192620.08313.0
TkA07G023670PF13646HEAT_22233140.09413.7
TkA07G023670PF24768ARM_ARMC52454231.7e-1971.0
TkA07G023670PF00514Arm2532901.1e-2589.4
TkA07G023670PF11701UNC45-central2533500.008416.6
TkA07G023670PF03224V-ATPase_H_N2693960.05113.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5XEZ8Arabidopsis thalianasp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 265.400%Swiss-ProtMedium
Q8GWV5Arabidopsis thalianasp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 358.900%Swiss-ProtMedium
Q8VZ40Arabidopsis thalianasp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 1453.000%Swiss-ProtLow
Q5VRH9Oryza sativa subsp. japonicasp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 1254.500%Swiss-ProtLow
A2ZLU6Oryza sativa subsp. indicasp|A2ZLU6|SL11_ORYSI Protein spotted leaf 1156.100%Swiss-ProtLow

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