Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2223 bp · TkA07G023320|TK1151|cDNA
ATTTTACCAACAAGTCAACAACCGTGCCCTAACAGGTGTTTCCCAATTTGCTGCGTCTTTTCATCCCGAGTGTTGGTTTTATGTTGTCAGCCTTTACTCTCATCTCTTTCTGGTTCCATCTAAAGTTTTGATTTCCTTTTTACAATCGGAACGCGAACTGCACTGGATGAATCTTCAATTATCATCATGTACTTTGAGTGACACCCAGTTGCTCAATCCGCCCTCTTTCTTCCGTATTCTGATCTATTTTTGGGTGTTAT...
1182 bp · TkA07G023320|TK1151|CDS
ATGTACGAAAATCAAAGGAAAAAAAAGATGGTGAAAGTGAGATGGTTTCATAAAAGTGAAGAACTTACCGACCTAATTTCAAATCCTCAACCCCATGAGCTTATAATCACATCCCATTTTCAAAATCTGAGTGCTGAATGTATTGATGGACTTGCCACCATTTTAACCCCTAAACATTACACCCAATGTTTGAATCTTGTTACACAAGATTTCTCAGATGGGATTTATATGTGTTCTAAACAACTCAAAAACGATCAAGT...
Protein
Download Protein FASTA393 aa · TkA07G023320|TK1151|PROTEIN
MYENQRKKKMVKVRWFHKSEELTDLISNPQPHELIITSHFQNLSAECIDGLATILTPKHYTQCLNLVTQDFSDGIYMCSKQLKNDQVSSFPFCKLRGYNTQIIFSIINIPIDVNKNYQETSITKGKEEEEEEEEEEEDDDEDEEEEEEEEDDDDDDDDEEEEEEEEEEEEEEEGDEDLKDVVVISDNDEVEKKHTFYVGQDVEVLCHDSGLRGCWFRCKILKMLEKEIKVLHMDVKDAVGHEKLKEWVPMYKIAPLDKLG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G023320 |
|---|---|
| TK1151 ID | TkA07G023320 |
| OH-1004 ID | LXL04_031027 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 35.900 |
| Protein coverage (%) | TK1151 92.621 / OH-1004 56.731Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G023320 |
|---|---|
| Location | Chr07:6316794-6320887 (+) |
| Description | Similar to DUF3: DUF724 domain-containing protein 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process GO:0009651 response to salt stress Biological Process GO:0009934 regulation of meristem structural organization Biological Process GO:0010468 regulation of gene expression Biological Process GO:0071555 cell wall organization Biological Process GO:2000280 regulation of root development Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0000775 chromosome, centromeric region Cellular Component GO:0000792 heterochromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0009506 plasmodesma Cellular Component GO:0042393 histone binding Molecular Function |
| KEGG gene cross-reference | ath:AT1G09320 ath:AT1G26540 ath:AT4G17330 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02862DDHD37-173 aaPF13299CPSF100_C82-199 aaPF12722Hid199-173 aaPF13425O-antigen_lig102-193 aaPF15749MRNIP110-167 aaPF04546Sigma70_ner112-172 aaPF04931DNA_pol_phi114-180 aaPF07454SpoIIP114-184 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G023320 | PF02862 | DDHD | 37 | 173 | 0.016 | 16.1 |
| TkA07G023320 | PF13299 | CPSF100_C | 82 | 199 | 0.017 | 16.0 |
| TkA07G023320 | PF12722 | Hid1 | 99 | 173 | 0.52 | 9.2 |
| TkA07G023320 | PF13425 | O-antigen_lig | 102 | 193 | 2.2 | 7.9 |
| TkA07G023320 | PF15749 | MRNIP | 110 | 167 | 0.76 | 11.3 |
| TkA07G023320 | PF04546 | Sigma70_ner | 112 | 172 | 1.1 | 9.8 |
| TkA07G023320 | PF04931 | DNA_pol_phi | 114 | 180 | 0.094 | 11.6 |
| TkA07G023320 | PF07454 | SpoIIP | 114 | 184 | 3.9 | 7.7 |
| TkA07G023320 | PF30130 | VID28_C | 117 | 169 | 1.5 | 8.3 |
| TkA07G023320 | PF21119 | RYDR_Jsol | 117 | 183 | 2.0 | 7.9 |
| TkA07G023320 | PF02535 | Zip | 119 | 179 | 1.2 | 9.0 |
| TkA07G023320 | PF03666 | NPR3 | 119 | 173 | 2.6 | 7.5 |
| TkA07G023320 | PF09073 | BUD22 | 120 | 191 | 0.00055 | 20.1 |
| TkA07G023320 | PF04147 | Nop14 | 122 | 194 | 1.8 | 7.5 |
| TkA07G023320 | PF04006 | Mpp10 | 123 | 176 | 0.00061 | 19.4 |
| TkA07G023320 | PF01496 | V_ATPase_I | 123 | 183 | 5.7 | 5.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.