TkA07G022350 | RubberDandelionOmics

Gene overview

TkA07G022350

Reference: TK1151 Chr: Chr07 Coordinates: 6093228-6095842 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1254 bp · TkA07G022350|TK1151|cDNA

TATTTGTTGACAATTTGACCCAATTCAACCCAATACCAAAATATCACTCTTTTCTCTGGTGAAAGATAGACGAACAGTAGGAGTGAACGTGGCTTGCTAAAATATACACATACATATATGTTTATGGAGGCGAGAATTGAGATCGTAAACTGTAACTAAGAAGAAAAAAGTATGATAATCCGAAGTCTCCCAAAACCATCTATTCAATGTTTTATCTCCACAAATCCTTCCTTATCAAGTCTCCGTCTCCGCCCTACCTA...

CDS

Download CDS FASTA

993 bp · TkA07G022350|TK1151|CDS

ATGATAATCCGAAGTCTCCCAAAACCATCTATTCAATGTTTTATCTCCACAAATCCTTCCTTATCAAGTCTCCGTCTCCGCCCTACCTATCTCACCGGCGGCGCTGCAGGAACATTCAGAAACGCATTTGGAATCCATCCAAACGCACGTTCCGTATCAGCTTCATTGAGGTCTTCAGCAACTAAACAGCTCGATGATGTGTTATCTGCTAAGGAGGACGATCATGGAGGTGTGATAGTCGAAATATCTACAGATCCCAT...

Protein

Download Protein FASTA

330 aa · TkA07G022350|TK1151|PROTEIN

MIIRSLPKPSIQCFISTNPSLSSLRLRPTYLTGGAAGTFRNAFGIHPNARSVSASLRSSATKQLDDVLSAKEDDHGGVIVEISTDPMDSILFTCLLKASIEQWKQQGKKGVWLRLPIQLANLIEPAVNEGFYYHHAEKDYLMLVYWIPATINTLPANATHRVGVGAFVMKENGEVLVVQEKGGKMKGTGVWKFPTGVVDEGEDICDAAVREVKEETGIDAKFVEILAFRQSHKKFFGKSDLFFMCMLEPLSFHIQKQERE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G022350`
TK1151 ID	TkA07G022350
OH-1004 ID	LXL04_026980
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G022350

Location Chr07:6093228-6095842 (+)

Description Similar to NUDT2: Nudix hydrolase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47650`	Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.	Comprehensive analysis of cytosolic Nudix hydrolases in Arabidopsis thaliana.2005 · DOI: 10.1074/jbc.m503536200 Overexpression of an ADP-ribose pyrophosphatase, AtNUDX2, confers enhanced tolerance to oxidative stress in Arabidopsis plants.2009 · DOI: 10.1111/j.1365-313x.2008.03686.x
`At4g25434`	May mediate the hydrolysis of some nucleoside diphosphate derivatives.	No verified direct reference in this release
`At2g04450`	Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.	No verified direct reference in this release
`At4g12720`	Mediates the hydrolysis of some nucleoside diphosphate derivatives.	Analysis of Arabidopsis growth factor gene 1 (GFG1) encoding a nudix hydrolase during oxidative signaling.2006 · DOI: 10.1007/s00425-005-0183-y Salicylic acid-independent ENHANCED DISEASE SUSCEPTIBILITY1 signaling in Arabidopsis immunity and cell death is regulated by the monooxygenase FMO1 and the Nudix hydrolase NUDT7.2006 · DOI: 10.1105/tpc.105.039982 AtNUDT7, a negative regulator of basal immunity in Arabidopsis, modulates two distinct defense response pathways and is involved in maintaining redox homeostasis.2007 · DOI: 10.1104/pp.107.103374
`At5g47240`	Probably mediates the hydrolysis of some nucleoside diphosphate derivatives (By similarity).	Functional characterization of a Nudix hydrolase AtNUDX8 upon pathogen attack indicates a positive role in plant immune responses.2014 · DOI: 10.1371/journal.pone.0114119

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026980 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002758 innate immune response-activating signaling pathway Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010193 response to ozone Biological Process

GO:0010581 regulation of starch biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051707 response to other organism Biological Process

GO:0070212 protein poly-ADP-ribosylation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080151 positive regulation of salicylic acid mediated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT2G04450

ath:AT4G12720

ath:AT4G25434

ath:AT5G47240

ath:AT5G47650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.675

Rank 1 · TkA07G022350 · TK1151

Mitochondrion0.379

Rank 2 · TkA07G022350 · TK1151

Cytoplasm0.047

Rank 3 · TkA07G022350 · TK1151

Nucleus0.034

Rank 4 · TkA07G022350 · TK1151

Peroxisome0.013

Rank 5 · TkA07G022350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18290Nudix_hydro68-147 aa

PF00293NUDIX160-276 aa

PF14815NUDIX_4167-277 aa

PF22327Nudt16-like185-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G022350	`PF18290`	Nudix_hydro	68	147	1.3e-29	102.8
TkA07G022350	`PF00293`	NUDIX	160	276	4.6e-26	92.1
TkA07G022350	`PF14815`	NUDIX_4	167	277	0.0037	17.8
TkA07G022350	`PF22327`	Nudt16-like	185	225	0.076	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94B74`	Arabidopsis thaliana	sp\|Q94B74\|NUDT2_ARATH Nudix hydrolase 2	61.200%	Swiss-Prot	High
`Q6NPD7`	Arabidopsis thaliana	sp\|Q6NPD7\|NUD10_ARATH Nudix hydrolase 10	56.800%	Swiss-Prot	High
`Q9SJC4`	Arabidopsis thaliana	sp\|Q9SJC4\|NUDT6_ARATH Nudix hydrolase 6	52.600%	Swiss-Prot	High
`Q9SU14`	Arabidopsis thaliana	sp\|Q9SU14\|NUDT7_ARATH Nudix hydrolase 7	49.600%	Swiss-Prot	Medium
`Q8L7W2`	Arabidopsis thaliana	sp\|Q8L7W2\|NUDT8_ARATH Nudix hydrolase 8	44.900%	Swiss-Prot	Medium

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